HsaINT0108823 @ hg19
Intron Retention
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:7603]
Coordinates
chr18:47363081-47364172:-
Coord C1 exon
chr18:47363887-47364172
Coord A exon
chr18:47363256-47363886
Coord C2 exon
chr18:47363081-47363255
Length
631 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCTTTCTACCTATGGCTAAGGTA
3' ss Score
2.64
Exon sequences
Seq C1 exon
TTTCTGCCATGTTGGAAAATGAGAGCATTCAGGGTCTATCTGGTGTGAAGCCCACCGGCTACCGGAAGCGCTCCTCCAGCATGGCAGATGGGGATAACTCATACTGCCTGGAAGCTATCATCCGCCAGATGAATGCCTTTCATACAGTCATGTGTGACCAGGGCTTGGACCCTGAGATCATCCTGCAGGTATTCAAACAGCTCTTCTACATGATCAACGCAGTGACTCTTAACAACCTGCTCTTGCGGAAGGACGTCTGCTCTTGGAGCACAGGCATGCAACTCAG
Seq A exon
GTAAGGGAGGAGCACCCCCCAACAACACAGATAGAGTGGGCCCTCACTGACTGCAGCTAGAATCAGAACACAAGACTGCTGTTTCTAAAAATGAAATCCAAATCTAATTGACAGTCCTTGTCTCCATCAGTCTGTGACTCAAATCCATCACCTTTTTACCTGTTGGTGAAATCCGTCGAACACTGAGATGGTTGACTTGGTAAACAAATTAGTTCAAAGCTTAAAGATGTTGACATACTCTAAGTTAAAGACTGAATACAAAGCAGATAGGTCAGAGAGAAAACTCAATGAGTTAAGAGGCATGAAGGCTCACATAGAAGTATAAATACATTTGTGAATGTTAAATATAAATACTTACAATTCAGTATATTTAATGCCTGTTTTTCCCTGTTAACTTATGTAGACACTTCAGGTATTTCATCTTTGCTTGATTTTAAGTACCCACTCATTCATTTATTCATTCTTTATTCAACAAATAGTTCCTGAGTGCAAGGCACTTGCCATGCTTTTTAACCGTGTGAGATAAATAATGGCACTAGCTGCAGCGGGCCTGCAAAACACAACAGGTGTCCCCTTCTCAGTGAATTAGGAGGACCGGCTTAACATAGCTTGCTTTCTACCTATGGCTAAG
Seq C2 exon
GTACAATATAAGTCAGCTTGAGGAGTGGCTTCGGGGAAGAAACCTTCACCAGAGTGGAGCAGTTCAGACCATGGAACCTCTGATCCAAGCAGCCCAGCTCCTGCAATTAAAGAAGAAAACCCAGGAGGACGCAGAGGCTATCTGCTCCCTGTGTACCTCCCTCAGCACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-MYO5B:NM_001080467:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.4)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCTATCATCCGCCAGA
R:
CTGAGGGAGGTACACAGGGAG
Band lengths:
343-974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)