RnoINT0097283 @ rn6
Intron Retention
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70717491-70718842:+
Coord C1 exon
chr18:70717491-70717776
Coord A exon
chr18:70717777-70718667
Coord C2 exon
chr18:70718668-70718842
Length
891 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCTTTTTGCCTTGGCTAAGGTA
3' ss Score
5.28
Exon sequences
Seq C1 exon
TTTCTGCCATGCTGGAAAATGAGAGTATCCAGGGGCTGTCAGGGGTGAGGCCAACTGGCTACCGGAAGCGCTCGTCCAGCATGGTGGACGGAGAAAATTCGTATTGCCTGGAGGCCATCATCCGCCAGATGAATTTCTTTCATACAGTCCTGTGTGACCAGGGCCTGGACCCTGAGATTATCCTGCAGGTGTTCAAACAGCTTTTCTACATGATCAATGCGGTGACTCTTAACAACCTACTCCTGCGGAAAGATGCCTGCTCCTGGAGCACCGGCATGCAACTCAG
Seq A exon
GTGAGAGAGGTACTCACGCCAGCACACGGAGACCGAGCCCCAACGTAGGCTGGGGTCCGAACCCAAGGCAGCTGCCTCCAGGGTGAAATCCACGTCTAACTAGTAGCCCTTCCCATAATTGGTATGCCATAAATCCTTCACCGTCTTATTAATTGGTGGAGTTCACTCAGCAGTGACATTCAAACGCAGTCAGATACCCTTTAATTAAGACAAATGCAACATGGCCAGGTCAGCGAGAAAGGAGAATGGATCAGGAGTTAACAAGGCTGTCAAGGGAAGTATGAACGGTTGGAAATTAAATACAAATTATAATTCAATATATTTAATGCTTCCCTCCCTATTAATCTAGATAGACACCTTAGGTAATTCCTTCATTGCTTAATTTTAAGCATGCATTCAACTATTCATTCTTTACTCAGCGTATGGTTACTGAATGCTAGGCACTTTGACGAGTTTTTTTTTAACATGTGTGTGCATGTAGGAGTAGCGGTGCATACATGTGTGCATGAACATGTGGAGGACATCTCAAACATCCACCTTTAGCAAAAAACAAGTAAACAAAACACAAGCTCTCACTGGCCTAGAACTAACCAAAGTTGTCTGGGCTGGCTGGCCAGCAAAAAAAAAACTCTCTCTACCTCCTCAGCCCAGCACCAAGATTACACCTGTGTGCTACCTCACCCATTTGTGGTTTTGTGGTTTGTTTGCAGTCTGTGTGTCTGTCTGAGTGTTTGCATATGGGTCTTGGCACCAAATTCAGGCCCTCTTGAAGTGAGGGCAGATGACACTAATTACACATCACCAGCACAGCACAGGAGACGCCCCTTCCCACCACCCATCTTCACCCCGTGAATTAAGGCTTAACACAGCTTCCTTTTTGCCTTGGCTAAG
Seq C2 exon
GTACAACATAAGTCAACTCGAAGAGTGGCTTCGGGGAAAAAACCTTCAGCAGAGTGGAGCGGTTCAGACCATGGAGCCCTTGATCCAGGCAGCCCAACTCCTTCAGCTGAAGAAGAAGACCCAGGAGGATGCTGAGGCCATCTGCTCTCTGTGTACCTCCCTCAGCACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104:ENSRNOT00000019512:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0184314=DIL=PU(31.1=34.4)
A:
NA
C2:
PF0184314=DIL=FE(54.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTATCCAGGGGCTGTCAG
R:
CAAGGGCTCCATGGTCTGAAC
Band lengths:
347-1238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]