BtaINT0011091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49673097-49673706:+
Coord C1 exon
chr3:49673097-49673217
Coord A exon
chr3:49673218-49673643
Coord C2 exon
chr3:49673644-49673706
Length
426 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CACTTTCTCTGATCTTGCAGGTT
3' ss Score
11.03
Exon sequences
Seq C1 exon
GACTACCGAGCCTGCAAAGGAGCCCATCACAGATGAAGATGATGATGTGGCTGAAGAAAGGCAGAGAATTATTAGTGGAGGAAATAAAACTGATATCTTAAGGCTAAATGAACTCACCAAG
Seq A exon
GTAAGGGAATAGATACAGGAATGTTAGTTTGGAGGTGCCAGTTGGACTAAGATGGCACGAAGCTGTAATTTACCTTCTGAAGAATAGGCAACATGCTAATGCAAGCAATTCCTTTCCCCAGTGTTATGTGAGATTGTCATCTTTGTTATAACTAGTCTTCCAAGAACTTTCAATGCTCTTTCCCTAGCATTTATCTTGAGCACTGACACAGGGCCTCAGCAAGAGCCGCTGCAACTGAGCCCTGCTAATGAATCTTCCTGCACTCCATTTCTGCACAGAGGCTCAGCTTCAACGCTCTCAGCGCTCACAGCACCTCTGTGCACATCATGTCGATGTGTAACCTTCACCTAAGCCATCGTTTGCTCTCCTGCCCTCCCCCTGTTTAACCCTCTGTTAGTCCTCAGTCCACTTTCTCTGATCTTGCAG
Seq C2 exon
GTTTATTCAGGCACCTCCAGCCCAGCAGTGGACAGGCTGTGTGTGGGAGTCCGCCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010:ENSBTAT00000023982:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(11.6=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACCGAGCCTGCAAAGGA
R:
CTCTCCAGGGCGGACTCC
Band lengths:
184-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]