GgaINT0034992 @ galGal3
Intron Retention
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14424662-14425684:+
Coord C1 exon
chr8:14424662-14424782
Coord A exon
chr8:14424783-14425621
Coord C2 exon
chr8:14425622-14425684
Length
839 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
GATTGTTTTTGTCAATTTAGATT
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTTTGCTGAGACTGCCAAGTCACCTATTATTGATGAAGATGAGGATGTTGCAGAAGAAAGAAAAAGAATTCTGAATGGAGGGAACAAAACAAATATCTTAGAATTACAGGAACTCACCAAG
Seq A exon
GTACTATTTTGAGAAGAATGAAATAAGCGAATCTACTGCAAGTTGGCTCTTTCAGAATGTATTTCAGCTGTGGATTTGGATGGTATTGTTTTCAAAATTAAACTCATATCCTGGAAAATAAGAAATGTTTTAGAAGTCAGGGCTTGATATGTTATTTGACTGTTTCCTTTTAATAGAGATCAAATCTCAGGAAAGTCCAGCAAGGATAGTGAACTCTCTTGCTTAAGTTATTTTACCTCACATCATCCATCCCGACATACCTATTGAATGTGCATTTCTACTGTTAGTCTTTTCTTCCACAGCGCTGTTCCTCCATAGGTGAATTTCAATCTCAGGTTAACCATTTAGTCGCTTTCATATTGAGGACTAGTGTAGCCACTAATTTATCTTCTTTCCAGACACTGAAGGTAGGTAATCAATGCTATCAGAATACATGTAAGCCTGACCTACAGAAGTAAAAAGATTGCAAACATCATTGGGATCTCATGAATAAAGAATTGAAGAGTCATTCTTCAAAATATCTTGTTGTATTGTATGATGTCAGAGTTACTTTGTACCAGCAAAGCATCAGGTCTGTCTCCTAGTGCTACAGTTATGAAGTAAAAAGGTTCATGAAAGGAAAAGTTGTATTTTTAGGCATTATTATAAATTTATTTAAATAAATGCCTGACCTTCTTGATGCTTGCTCTTTCTTCTTAAAACTTTATTTAGTTGCTCTTTTACTTTTGTATTGGTTCTAAAGTTGCCTCATCCCAGTAGCATTAAACTAAAAAATTCAGAAATTTTTCTTTGCTGCAAAAATCTTGAAATAGGATTTTTGATTGTTTTTGTCAATTTAG
Seq C2 exon
ATTTATGCAGGTAGGCATAAGCCAGCAGTGGACAGACTCTGTGTTGGCATCCGTCCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(7.6=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCTGAGACTGCCAAGT
R:
CTCTCCAGGACGGATGCCAA
Band lengths:
184-1023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]