BtaINT0015427 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017632 | AEN
Description
apoptosis enhancing nuclease [Source:HGNC Symbol;Acc:HGNC:25722]
Coordinates
chr21:20006107-20007367:+
Coord C1 exon
chr21:20006107-20006307
Coord A exon
chr21:20006308-20007130
Coord C2 exon
chr21:20007131-20007367
Length
823 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ACGTGGGCTCTCGTCCGCAGGTG
3' ss Score
11.47
Exon sequences
Seq C1 exon
ATCCTCAAGCTCTTGAAGGGCAAGGTGGTGGTGGGCCACGCCCTGCACAACGATTTCCAGGCCCTCAAGTACATCCACCCTCGGGGCCAGACCCGGGATACCACCTCCGTCCCCAGCCTCCTCAGCCAGCCAGGGCTCCACGTCCGGAATCGTGTCTCTCTTAAGGACCTGGCCCTGCAGCTGCTGCACAAGAAGATCCAG
Seq A exon
GTGTGTGGGGCCGGAGGGGAGTGGAGCGGGGAGCCAGGGGCCATGGGCAGGCAGTGCGGGGCCTGCCACTTCCCCAGCCTGGTCCTGGGACTCCCAGGTGTACACAGAACCCTGGGCATTTTCTCTCCACCCTCCTCTTCAGTAAGTTGTGACTGGAAGCCACCTGCTCCCAGGCTGCTCTCTTTAGATCCATCTCCCACCCAGTTCCTGCTTCTGTCCTCTCGTTCACGTGTAGAATTCCATCTCCTCCAACCAGGAGTGGTCAGGGGTACCTGTCAGTCTTGGTCCTCCTGTGTTTCACATTCATTATTCCATCTGCTCCGCAAGCCTTTGAATTGGGTTTAATGTATTTATTTTTTCCATATGACTGCGTCGAGTAGATCTTTGTTGCTGCCTGCGAACCTTCTCCAGTTGCGACAAGTGGAGGCTGCTCTCTGGTTGCGGTGCTCGGGCTTCTCAATGCAGTGATTTCTCTTGTTGCAGGGTGTGAGCGAAGCCCATGGCCTATGAGATCTTCCCGGACTAGGGAATGAACCCATGTCTCCTGCATTGGCATGCAGATTCTTTACCACTGAGCCACCCGGGAAGCCCAGAATCAGGGATTTTTAAACTAGTTTTTATATTTAAGGAGATAGGCGAAAGAGATGGTTTGTGATACCGCTGGCATTCCAGCGCTTTTCTTTGTGACTGGGTCCCATGTCCTTCTCACAAGGCTGTGCACCCGTGTTCTGAGAGTACACGTCCCTGGGCCCTGACCCAGAGCCCGGGTCGCCTAACTTCCCCCCAGGACCGCGGGCAGTGACACGTGGGCTCTCGTCCGCAG
Seq C2 exon
GTGGGCCAGCACGGGCACTCGTCAGTAGAAGACGCCGTGACAGCCATGGAGCTCTACCGGCTGGTGGAGGTGCAGTGGGAGCAGCAGGTGGCCAGCAGCCTCCGGGCGCCGCCTGAGGACAGAGAGCCCGACAGCAGCACAGACATGGAGCAGTACATGGAGGACCAGTACTGGCCGGCGGACCCGGCCCAGGGCACCAGCGGAGACCCGGGGGCAGCGCCGGGCAGAAGGGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017632:ENSBTAT00000023454:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.679
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.3=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.5=22.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGGGCAAGGTGGTGGT
R:
GGTCCTCCATGTACTGCTCCA
Band lengths:
355-1178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]