RnoINT0014676 @ rn6
Intron Retention
Gene
ENSRNOG00000018421 | Aen
Description
apoptosis enhancing nuclease [Source:RGD Symbol;Acc:1305051]
Coordinates
chr1:140591076-140593745:+
Coord C1 exon
chr1:140591076-140591276
Coord A exon
chr1:140591277-140592454
Coord C2 exon
chr1:140592455-140593745
Length
1178 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTTTGTGCTCCTGTCCACAGGTA
3' ss Score
12.4
Exon sequences
Seq C1 exon
ATCCTTAAGCTGCTGAAGGGCAAGGTGGTGGTGGGGCATGCACTGCACAATGACTTCCAGGCCCTGAAGTACGTCCACCCTGGGAGCCAGATCCGGGATACGACTTATGTCCCAAACCTGCTCAGCCAGCCCAGCTCCCTCACCCGAGCTCGGGTCTCTCTTAAGGACCTGGCCCTGAACCTGCTGCACAAGAAGATCCAG
Seq A exon
GTATGTGGTACGGAATCTCTCAGAGGGTGGGAGGGAGGGAGGCTCATCTGACTTACATAACTGCTGAGGTGTGGCTAGGACTGTGGCCTGCTGTTTGTGCAGTGTGGAGCCATTTTATTCTGGGACTCCCCAGTGAGAGTCAAGATCTTCTAGGCTATCGCTTCTTTAGCTCTTTGCCCACCTAACTCTTGCCCAGGTCCTATGTCCCTATAGGATGTATTCTGACTCACTACCTCTAGAGGCTCAGGTCAAGGGGCCTGTGACTCTTGCTCTGTGCTGTTTTGGTATCTGTCTTCTAACCTCTGGGACAGGAATTTTATTTATTTATTTATTTATTATTTATTTATTTATGTTGTTGTTGTTGTTTTGTTTTGTTTTTCTTTTTTTCCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAATCCCCTGTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCAGTCCTGGAACTCAGACTGGGCTCTACTTCAGAAGTCTGCCAGCCTCTGCCTCCTGAGTTTTGGGATCGAAGGCTTGTGCCACCACCACTCCATTCCAGGATTTTTTTGTAATGTGTGTAGGTGTTTGGCCTGCATATACATTCGTGCATACATGCATGACACGTTCTTAGGGACCAGAAGAGGGCATCAGAACTCTGGGACTGGAGTTATAGACAATTGGTGAGCTGCCTTGTAGGTTCTGGGAATTGAGCCTGGGCCCTGGGGAAGAGCAGCCATTGCTCTTAACTATAGTTCGTTCTCTCCAGCCCAACATAAAGGAAGGGTTGTTGTAGTTGATGGTTTTATAGGGTCCATGTGCTTAGGCAGAACATCATGGAGGTAGAAGCATATGGAGCTATATGCCCATCCCATAGTGAAAGGGAAGCAGACAAAAGAACAGAGACAGACTATTCCCAAGGACCTTTTCTGGCAATGTGTTTCCTTAGGCCAAGTCCCACCTTTCAAAATAGCACTGCCAGCTGAGGAACAGGCCCATATCACACAGGCCTTTGGGGTATACTTTGTATCAAAATCATAGCAGGCTTCATTCAGAGATAAGTGCTCTTGACCGTCAATGGTCAGGTCCATTTCACCATGTAGTGATGTTTGTGCTCCTGTCCACAG
Seq C2 exon
GTAGGTCACCATGGACACTCATCTGTGGAGGATGCCATGACAGCCATGGAGCTGTACCAGCTGGTGGAGGTGCAGTGGGAACAGCAAGTGGCCAGCACCGCCAAGGCCCATCCTGAGGACAGGGGCCCTGACAGCAGCACTGATGTGGAGCAGTACATGGACGACCAGTACTGGCCTGAGGACCTGGCCCAGAGCACCAGGGGAGACACAAGGGAGGCCCAGGATAGACAGGAGGGAGAGGAAGGGCAGGGAGCCAGGAGTGCTCCTCCCTAGTCACACAGGGTGGGAGGTAACTGAAGTAACCTCCTGGTAACCAGGATCAGGGTTCTAAGGCAATGTTTCTCAAAACCTGATGGTCAGGACTCCTTTGTGGGGTTGAAAAACCTTTTCACAGGGGTCACCTAAGACCATCAGAAGACACAGGTATTTACATTATGATCCGTAACTAGCAAAATTACAGTTATGAAGTAGCAACAAAAATGATTTTATTTTGGGGGCTCTCCACGGCATGAGGAACTGTCTTAAAGAGTTGCAGCATTAGGAAGGTTTAGAACCACTGGTCTGGGATGACTTTAGGGCAGTAGTAGGCAAGGACTCAGGTCACACCATCCTCTGTCAGAGTCTCGTCATTCCTGCCACTTAGCATGGATACATTAGGCAAGCCTAATCGAGCCTGTTTTCCCTTTGTAAAGCGGGGAGTGGTGGCATCTACCTCATGGGTGTGTAAGCATGTTGAGTGTATCCTAGTGATTCAGTGCATGGGCTGTATTCAGGCCTGATTTCCAAGCAGCTATGGCTCAGGCAGGACTTTTTCACTTGGCTTTTCCATCAGATGAGGTGGGGCCAGGGCAAGGAGTTGAAAGCAGGGCAGGGGAGTTCAGAGGTCTCTGCAGGTCTTGCTGCCAGCTTCTGTCTCCACACCAGCCTCTTGACACTGCATCTGGGAAAGTGACAACAGTAATCCAGGCAGAGTCAGGAAGGAAGGGACACTACTGAGACCACACTTCCCACTCTCCACTGAGGTCCTGATTGCAGAAAGTTTTAGATTGTTTGATTGCTGGCTCCTCCCTGCCAGGGAAAAAGGGAGCTGGCAAAATCGTCACCACCACTTATGGTCTGGCGCCAGGGGTAAACTCTTGTTTCCTTAAAAAGCAGCAGCTTGTGCCAGCCTTGGTGCTGGGCAGTAGCCATTGTGGGTTGAAGGGTGGTGGAACTACTAGCTGGGAGAAGTGTACTGTGAGAAATCAGCTTGTTTGTGCTTCCAGAGGAGTAAAGGAATAAGTGCAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018421:ENSRNOT00000064438:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.756
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.3=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.5=19.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTAAGGACCTGGCCCTG
R:
TCAGTTACCTCCCACCCTGTG
Band lengths:
342-1520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]