MmuINT0012275 @ mm10
Intron Retention
Gene
ENSMUSG00000030609 | Aen
Description
apoptosis enhancing nuclease [Source:MGI Symbol;Acc:MGI:1915298]
Coordinates
chr7:78905843-78911209:+
Coord C1 exon
chr7:78905843-78906043
Coord A exon
chr7:78906044-78907143
Coord C2 exon
chr7:78907144-78911209
Length
1100 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTTTTTGCTCCTGTTCACAGGTC
3' ss Score
10.97
Exon sequences
Seq C1 exon
ATCCTTAAGCTGTTGAAGGGCAAGGTGGTGGTGGGGCACGCACTGCACAATGACTTCCAGGCCCTGAAGTACGTCCACCCTCGGAGCCAGACCCGGGATACCACTTATGTCCCAAACCTGCTCAGCCAGCCCAGCTCCCTTATCCGAACTCGGGTCTCTCTTAAGGACCTGGCCTTGAACCTGCTGCACAAGAAGATCCAG
Seq A exon
GTATGTGGTATGGAACCTCTTGGGAGGGAGGGGGCTCATCGGATTTGCATAATTGCTGAGGTGTGGATGGCACTGTGGCCTGCTGCATGCATATAGGCAGTATGGGTGTAGCTATCTCATTTTATTCTCTGTGAGTTCCCCAGTGAAAGTCAAGTTCTTCTAGGCTATATCTCTTTAGGTCTTTGCCCACCTCGCTCCTGCCCAGATCCTATCCCCATAGAATGGATTCCGACTCCCTAGCTCTGGAGGCTCAGGTCAAGGGGCCTTTGACTCTTGCTCTAAGCTATTTTGGTATCCATATTCTAACCTCTGGAGCGGGGATTTTATTTTTTTGGTTTTGTTTTGTTTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGACTGGACTCTACCCCAGAGGTCTTCCTGCCTCTGCCTCTGCCTCTGCCTCCTGAGTTTTGGGATTGAAGGCATGTGCCACCACAGCCCAGATTCTGGAATTGTTTTTTTAAAATATGTGTAGGTGTTTGGCCTGCACACATGTCTGTGCATCACATGCATGACTCGTTCTTGGAGATCAAAAGAAGGCATCGGATCCTCTGGGACTGGGTTACAGACAGTTTGTGAGCTACCACGTAGGTACTGGGAACTGAGCCTGGGTCCTGGGGAAGAGCAGCCAGTGCTCTTAACCACGGTGCGTTCTCTCCAACCCAACACTAAGGAAGGATTATTTTGCTTCATGGTTTTGTAGGGTCCGTGTGCTTAGGCAGACCATCATGGTGGTAGAAGCATGTGGAGCTATAACCCCACAGTGAAAATGGGGCAGACAAAAGAACAGAGACAGTATATTCCCAAGGACCTTCCCTGGCAACGTGTTTCCTTAGGTCCCTCCTCAGTTGAGTACCTTTCAAGATAGCACTGTGAGCTGGGAACAAGCCCACAGCACACAGACCTTGGAGTATATGTATCTAAATCACAACAGCCTCCATTCAGAGATAAGTGCTCCTGACCCTCCGAGGCTGGCTTTGTTTCAGGGGTGATAGTCAGGCCCATTTCACTACGTAGTGATGTTTTTGCTCCTGTTCACAG
Seq C2 exon
GTCGGTCACCAGGGCCACTCATCTGTGGAAGATGCCATGACAGCCATGGAGTTGTACCAGCTGGTGGAGGTGCAGTGGGAGCAGCAAGTGGCCAGCTCTGCCCAGGCCCCTGCTGAGGACAGGGGGCCCGACAGCAGCACTGACGTGGAGCAGTACATGGACGACCAGTACTGGCCCGAGGACCTGACCCAGAGCACCGGGGCCGAGACAAATGGAGGCCCAGATAGACAGGAGGGAGAGGAAGGGCAGGGAGCCAGGAGTGCTCCTCCCTAGTCACGGGGTAGGATTGGAGTTCTAAGGCAGTGTTTCTCAAAACCTGAGGGTCAGGACTCCTTTATGGGTTTAAAGCTTTTCACAGGGGTCGCCTAAGACCATCGGAAGACACAGCTGTGTACGTTATGATTCATAACTAGCAAAATTAGAGTTATGAAGTAGCAACAGAAATAATTTTATTTTTTGGGGGGGGTCTCCACAGCATGAGGAACTGTAATAAAGGGTTGCAGCATTAGGAAGGTGGAAAGCCACTGGTCTGGGGTAACTTAAGGGCACTGGTAGGCAAAGGCTCAGGTCACACCACCCTCTGACAGTCTCATCATTCCTGACACTTAACATGGAGACACTAGACAAGCCTGTGGCTTTCCCAGTGTAAAGTGGGAAGAGTGGCAGAGCCTACCTCATGGGGTGTGTCTTAGCACTCTGAGTGTATCCTAGTGATAAACAGGATGGGGCTCTGTTCAGGCCTGGTTTCTGAGCAGCTATTGCTCAGGTAGGTCTCTTGGCTTTTCCATCGGATGAGGTGGGGCCCAGGGCAAGGGTATTGCAGGGGAGTTCAGAGGTCTTGCTGCCAGCTTCTATCTCCACATCAGCCTCCTGACACTGCATTTGGAAACGTGACAACAGTAATCCAGGTCAGAAATGAAGGGATGCTACTGAGACCACACTTCCCACTGTCCACTGATTACAGAAAGCGTTAGTTAGTCACGGATTGTTTGATTTCTGGCTCCTCCCTGCCAGGGAAAGGGGGCTGGCCAAATCATCACCACTACTTCTGGCCTGGCACCAGGGTGAGCTCTTGTTTCCTTAAAAAGCAGCCACTTGCGCCAGCCTTGATACTGGGCAGTAGCATTGGTGGGTTGAAGGGTGAAAGAACTGTAAGCTGGGAGAGGCTTACTGGGAGAAGTCAGCTTGCTCATAGTACCAGACCATCGGCATAGGAATAAAGTGCATCTGGAAAAGTGAGTGAACTGGTCCTTTCTGGATGCTCAAGCTGGGCTGAAGGTGTGTGAGGCCAGGGAAGGCCCAGGGCTCTGAGCCTTGCTGGATGCTCGTCTTGAGATGCATTTCAAGATGGTACACGTTAGCTCTACAGCAGTTTCTGACTTCAGTTGGAGTTGGCTATTACACAGCACACTGTTTGATTTGGTCTCTCCCCAAAGCTAGGCTTTCACATTAGAAAGTGTTTGGTTTTTTGCCATTGAAACATAATCTCATGGTAGAGTCCAGCTTCTGTAACTCCTTATGGAACTCAGGCGATCCTCCTGCCTTAGCCCACCCAGGGTTGGCATTGTGAGCATATACTGTCTTTCCTGTAAGACTGCCCTTTAGGACTAAGTCCTTTGTGTATAATGTTAGTCACACGTTCGGTCACTTCCTCTCTTGCTATTGTGAATAAGATAGCCGTATATATGGTATGCAGATATGTTACCCTGTTTTCAAGTCCTTTACCCAGGAGGGGAATTGTTGGGCAGGGAGTGTGGCGTCATCTGGAAAAGGAGCCTGACAGGATCCGAGGGTAAAGCTGCTGTTCCCTAACTAAAAGGCTAGACCTATATTTGCATAGCAGCTTGATTCACAGATAATGTAGAAAGCAGACTTAATGATTCCAAGAGGGTTTTAACCCATTTTAGCCCTGTTTTTCAACATCCAGAATGAAAGAGATAATCAACTTTATTACAGTATTTTTCTTTGACACAAAAGCAGTAAAAGCCCAGCAAGCATCTAGGTCCGCATTGCTTTCTGAGGTTCAGCAACCCCACCCGGTGTCCCTTTACATTTCCTCCTTCAAGCTGTCAGCCTTTGTGGTCAGAGGTGTCAGACACTGGGGCATGATGCAGTGTTTGTGCCAGGTAGCATAGTAAGCAGGGAGCTTATCGCACCCCTCTGTGCCTCAGCCTTACAATATGGCCTGTTCTGCGCTCCCCCAAGGGAGAGTCCTGCTGTCTTACCCTTCTTTCATTCTACCGCGCCATCTTAATCCCTTCCATGTGTGCTCCTCCTGTATATGGCAGAGGGGATCGAGCCAGTTCTTAACAGTTTGCTCCTCATGGGGCTTTCCAGATCTTGCTGTTCACCCTGTAAGTCACGTACGCAGAGAAACGACTGTTTTGTACTTAGGACTGAACGCTTGCCCTTAACTGCCAAGGCCTCAGACTCTGGGTCTGGGCACATTGTTTCTCTGGATTGTGTGTTCTCAGATGGTAAGTGCATGAGAGTTCTGGAACCATCTTTGTTGGTGCAAACAAGGGCACAAAGGAGATTCTTTGTAGGAGTAGGCAGTTATCATGCTGTATGGTCCCACCGTGGTACAGAGTTTTTCCAAAGAATGCGTTGGTTTAGAGACTGCCATTGCCATTGTACACATTCACATCCTCTGCCAGACTGCGACAGGCGTCCCCAAAGGCAGAAGCGTAAGGAAACTCCAACACAGTGAGCATCATCAAGGATGAGAGCAGGATGCTGGAGAACTGACCCGAAATGTCCATGGATGCCAGGACTTTGTCAAGCAGCAGCGGTCACCACACCGTCTACACCAAGGAACCGTCACTTTCCCACAGTAACCGAGTTTCCATTCTCATCAACAGTTCACAAGGATTTCAGTTTTAGAGGAAGGGTCACACCATTTGACCTAGGTTGACTTGGAATTTGTGGTGATTCTCCTGCCTTGGCCTCCCTTTAAGACCGACCGTTGAGCTTGTAGGGCAGGTTGCCTCTAGGGAGAAGTGCCTCTGATGCGGTTAATTGTTTAAGGCTGTTTTGTATTCTATAACAAAACACCTGAGGGACGTGCTTGATGAAGACTTAGATAAAGCACAGCCATGGCAATTGGAAAGCAAGGTGCTGGTCTGCAGGGCTTTGCTGAGGGCCCCTATAGTGGATGATGTGAAAACAAACATATGTGCAAAAGACGACATGGCAAGGCAGGAGGCTTGGACAGTGAACCACTCTTAAGCCATTTGCACAGTGATAAATAGGGATTAGAAAAAGCCATCCAGTAGCTGCCTCCTGTGAGCTACAGGCATGATGGGTGAGCAGCTGATGGGATGTGTCCTTGGAAGGCTGACAAGTTTGCCCAGAGTGACTCTTGCTGTCACTTGATCACTGCCTGTGGACCTGGCTTGCTGTTTGATGCTGTCAGGGGAAGCTGGAAACGAACCCCACTACCTGGGGTCAGGGCTTCCCCCTTCAGGACTGTTAATACCCAGTACCTGGATCCAGCAAAAAGCACTGTATTCTTGGACAAACGTTCAGCATAATTCAGGCAGGGTTCTGGGAGCTGAGGCCCAGCTCTGAGGAACCACAAGAGGGCAAATGGAAGGCGCACTATGACTGCTTGTGGTATAACAGAAAAGGATAGGGCTGGAGACTGCTTTTAAGGAGAGGACAGGAGGTGCGCTTACACAGAGAGGCCTGGAGGGGGAGTTGCCAAGCAGATGATGCAGGTGTAGTCTCCTGGCCTTTGGACAAAATCGCCTCTATCTGGATCAGCTGTGCCTGTTTACAGTTCTGCTCATTGACTATTGATAGCCCCTCCCAGGGGGAGTCTGAGATTTCAGCTGCTGCCTCAGCCATTTGTATGCAGTTCTGCCCTGCCTGCGTGGGATCTGGGCTCAGACAATGGTAATGTATATAAGCAAGGGAAGCTTGCTGCCAAGCTAAGCTACAGGGATGCCACCACCATCCACACTAGATGAAGACTTACCAGTGTGTGTTTGATGTCCTTCCGGGCTTCTATAAGTAGCCTCTCACGCAGGCTCCATAAGTAAGCCCAATAAATTCATTGGTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030609:ENSMUST00000107425:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.603
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.3=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.5=19.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGTTGAAGGGCAAGGTG
R:
TCCATGTACTGCTCCACGTCA
Band lengths:
356-1456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types