GgaINT0027090 @ galGal3
Intron Retention
Gene
ENSGALG00000006736 | AEN
Description
NA
Coordinates
chr10:14819877-14820928:-
Coord C1 exon
chr10:14820728-14820928
Coord A exon
chr10:14820407-14820727
Coord C2 exon
chr10:14819877-14820406
Length
321 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
TGCTTCTCCCCTTCATTCAGGTG
3' ss Score
10.46
Exon sequences
Seq C1 exon
ATCCTGAAGATCCTGAAGGACAGGATCGTGGTTGGGCACGCCATCCACAACGACTTCCAGGCCCTGAAGTACTTCCACCCCAAGGAGAGGACGCGGGACACCAGCCGTATCCCACTGCTCAACCAGAGGGCCGGGCTGCCCCCTGGGGCCAATGCCTCGCTTAAGAGCCTGGCCAGACACCTGCTGCAGAAGAAGATCCAG
Seq A exon
GTGAACCCCACGGACCACGGGGGGAGGTGGGGAGGTCCCGGTTTGTACAAGCTTATGGGGCCAGCCTGGTCCTGGGTCGGTGTGGGGAGGCAGAGACAGTAGCATGGATCCCTTGGTGAAGAGATAGGCTCACCTCCTAGATCTTCCAGTGTTGCATCCAAACCCTCAGCTCTTGTTCTTAAGACGAGCCAAAAATTAGACTTGATGAGCCTTATGATCCCTTCTAACACGGGATATTCTATGATCACGTTTTATTCTATGATTCTAAGTGCCGTGGGTGATCTTTGCCGGCCCCTAACAGTGCTTCTCCCCTTCATTCAG
Seq C2 exon
GTGGGCTGCAAAGGGCATTCATCGGTGGAGGATGCGCGGACTGCCATGGAGCTGTACAGACTGGTGGAGGTGCCGTGGGAGGCAGAGCTGGCTCGCAGCCAACCCCCCCGACCCCCCAGCCCCACAGACCCCATCACCGACAGCCACCAGTACATGGATGACCAGTACTGGCCCCAGGACCTGATGGTGGGCACCCTGTGACCGGGGACAGCTCTCTGTCCGTGGTGTTGGGGACATCCCTGTGCCTTCACCTCTGAGGTGTGGAGGGACACGTGGGGTCCTGGTGCCACCCTGGACGAACACAGCGGTGGAGTGGGGCTCTTAAGGCACCTCCGATGCCCTCCGAGGGAATGCCCTGCCTGGTGTCACCATGCTGCTCGTGGTGGGAGAGCTGAGGCGAGTGGTTTCTCTGCAGGTTCTGTGGTCCATGATGCACATCGTGGCCCTGCGGCAGCAGTTCAGAGCTGCTGTGCTGCTGCCTGGTTGCTGCAGAGCATCTGGGGCTGGTGTGTTCCAGCACCGTTTTCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006736:ENSGALT00000010894:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.379
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(42.3=100)
A:
NA
C2:
PF0092919=RNase_T=PD(11.5=26.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACAGGATCGTGGTTGG
R:
GGTCATCCATGTACTGGTGGC
Band lengths:
350-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]