BtaINT0021742 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105542583-105543034:-
Coord C1 exon
chr11:105542852-105543034
Coord A exon
chr11:105542760-105542851
Coord C2 exon
chr11:105542583-105542759
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
ACAGGCTGGCCCTTCCCCAGAAA
3' ss Score
4.69
Exon sequences
Seq C1 exon
CAACCCAATGTGGCCTCCACCACCAAGAAGTTCTCCTACAAGCTGGTGAAGACGGGCAGCGTGGTCCTCACGGCCAGCACCGACCTCCGAGGCTATGTGGTAGGGCAGGTGCTGAGGCTGCAGGCAGACATTGAGAACCAGTCAGGCAAGGACACCAGCCCGGTGGTGGCCAGTCTGCTGCAG
Seq A exon
GTCAGCGTCCCCTGGCTGCTGGGCCCCGTCCCTTGGGGCAGAGGAGGGGCGGGTGGCTGGCCGCCCAGGCTCACAGGCTGGCCCTTCCCCAG
Seq C2 exon
AAAGTGTCCTACAAGGCCAGGCGCTGGATCTATGACGTGCGGACCATCGCCGAGGTGGAGGGAGCCGGCGTCAAGGCCTGGCGGCGGGCTCAGTGGCAAGAGCAGGTTCTGGTGCCCGCCCTGCCCCAGTCCGCCCTGCCAGGCTGTAGCCTCATCCACGTGGACTACTATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147:ENSBTAT00000032616:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCAGACATTGAGAACCA
R:
GAACCTGCTCTTGCCACTGAG
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development