RnoINT0021395 @ rn6
Intron Retention
Gene
ENSRNOG00000007622 | Arrdc1
Description
arrestin domain containing 1 [Source:RGD Symbol;Acc:1309961]
Coordinates
chr3:2130807-2131262:-
Coord C1 exon
chr3:2131080-2131262
Coord A exon
chr3:2130984-2131079
Coord C2 exon
chr3:2130807-2130983
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ACAGCCCAGTCTTTCCTCAGAAG
3' ss Score
2.77
Exon sequences
Seq C1 exon
CAACCCAATGTGGCCTCTACTACCAAGAAGTTCTCCTATAAGCTGGTGAAGACCGGCAGTGTGGTTCTCACAGCTAGCACGGACCTTCGTGGCTATGTGGTAGGACAGGTGCTGCGGCTGCAGGCTGACATTGAGAACCAGTCGGGCAAGGACACCAGCCCTGTGGTGGCCAGCTTGCTACAG
Seq A exon
GTCAGAGCCATCTGGTTCCCTGAGCCTGTCCCTTTCCCATGGGACAGAAGGGGTGGGTGCCAGCCTGCCCAAACTCACAGCCCAGTCTTTCCTCAG
Seq C2 exon
AAGGTGTCCTATAAGGCCAAGCGCTGGATCTATGATGTGCGGACCATTGCAGAGGTGGAGGGCACAGGTGTCAAGGCCTGGAGGCATGCTCAGTGGCAAGAACAGATCCTGGTGCCTGCCCTGCCCCAGTCAGCCCTGCCTGGCTGCAGCCTTATCCACATCGACTATTACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007622:ENSRNOT00000010169:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTCACAGCTAGCACGGAC
R:
TGCAATGGTCCGCACATCATA
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]