HsaINT0012824 @ hg19
Intron Retention
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:28633]
Coordinates
chr9:140508484-140508927:+
Coord C1 exon
chr9:140508484-140508666
Coord A exon
chr9:140508667-140508750
Coord C2 exon
chr9:140508751-140508927
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ACAGGCTGGTCCTTCCCCAGAAA
3' ss Score
6.11
Exon sequences
Seq C1 exon
CAACCCAACGTGGCCTCTGCCACCAAGAAGTTCTCCTACAAGCTGGTGAAGACGGGCAGCGTGGTCCTCACAGCCAGCACTGATCTCCGCGGCTATGTGGTGGGGCAGGCACTGCAGCTGCATGCCGACGTTGAGAACCAGTCAGGCAAGGACACCAGCCCTGTGGTGGCCAGTCTGCTGCAG
Seq A exon
GTCAGAGCCCCCGCCAGTTGCCTGGACCGGCCTCCTGGGGTGGGCTGGCAGCCTGCGCAGGCTCACAGGCTGGTCCTTCCCCAG
Seq C2 exon
AAAGTGTCCTATAAGGCCAAGCGCTGGATCCACGACGTACGGACCATTGCGGAGGTGGAGGGTGCGGGCGTCAAGGCCTGGCGGCGGGCGCAGTGGCACGAGCAGATCCTGGTGCCTGCCTTGCCCCAGTCGGCCCTGCCGGGCTGCAGCCTCATCCACATCGACTACTACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-ARRDC1:NM_152285:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAGCTGGTGAAGACGGG
R:
CCAGCGCTTGGCCTTATAGG
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)