DreINT0033635 @ danRer10
Intron Retention
Gene
ENSDARG00000068148 | arrdc1a
Description
arrestin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030925-15]
Coordinates
chr5:28920937-28922951:-
Coord C1 exon
chr5:28922769-28922951
Coord A exon
chr5:28921114-28922768
Coord C2 exon
chr5:28920937-28921113
Length
1655 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACTGTTGCTCTCATTTTCAGAAA
3' ss Score
11.1
Exon sequences
Seq C1 exon
GAACCTAGCTCATCCTCCGTAACCAAGAATTTCTCATACATGCTTGTGAAAAATGGGACAGTGGTGCTGAATGCGAAGACTGACATGCGGGGGTATATTGCAGGACAGATCATTAAAGTTTCCGCTGGGATTGAAAACAAATCTGACAAGACGACAGGTCATGTGGTTGCCAGTCTAATGCAG
Seq A exon
GTAAGATGACACTGACAGCTTGCTGAGTGTATTGTGCTGTTTCTAAGACTGATATCATATTCTGAAGCACTTTAATTGCCATGTACTGTGGGTTTATGTGTTCAAGGAATTTGTCTTGGCATCTTTTGTGAGGTAAAGCATATTTTAATTGAATGTTTATTTTTCAGTGCTTTTATAAGGTGTCTCCTGGATGAATTTTAGATTATTTATCACTGACTAAATTGAAAGACCTTTTGTCAGTAATGTTATTTGTGTATATATGTTTTGCATGATGCTTATTTATTAAGAAAATGTTATGTATTTAATATGTATTACTATCATTTCCATGAATATAGTCAGTACAGCTAATAAGAAATTTCAACAAACTAATAAATAAATGTGTACAATCAAAATTTGGCAAGGTATAAGTTAAAAACATGGCAAAAATAACTCTATATTACATTATAGATCATGGTTCTAACATCATTTAAAATACTCTGCCTAATTAATTGAAATCATGACTTGGACTTAATTTAACAACTATTTATTAAGAATTGAAGATTATATAATTTCATAGTGTTTTGTAGTGCCCTTAATTGTAATTGTGTTGTTTACAAATGTTTATTTTTACTTATATTTTTAGATAATTTTATATGTGCAATTGTATTTATTATCATTTCTTTTTAAAATTCTACTTTTTGTATTAATATTATATGTTAGGCATGCTAGGGTCTGAGAGTAACGCAGTTTCGATTCTCTGTCCTGTACATGTGGTTGAATTGACAATTAAGCTGACTTCGACTAAATAATGGAATGCACCACTCGTATTAATTTAGAATGCAATTTCTATAAATTGTTATTTAAATTGTGACATATTTTAACAAAAAACAGTTAATTTGTGATGATCAACTTCATTGTTATGCAGTTTGTAATCTTTTAGCTTATTTGTTGATTATTGATTACTGTGGTGTGACTTTTGGCTTGTTTCTGGGGTTTTATGCAAGCTTATAGTTCTGGCTTGAGTTGCATTTTTATTTGTTGTTGTCATTTTGTAGCCATTTGAGTTGAAGCGCATCATAAAATGTATTATTATTATTAGTAACATCATTATTGTTGTTGTAGATGTTATTGTTAGTATTATTATTATTGAATTTATGCCTGTTAAAGTTAAAACATCAACATTTTAATTGCATCATGTAGCATGTTGTGTGTGTTAAGTTTTAATTTATTATTATTGCTTTGAGAAATACATTATTCTTATTCATTATTCATTGTTCTTTGTTGTGTTTTTCACATTGTGAAAGGAGCCATAAACATTATTTTGTTCTTCTGAGCTGTACATTCATCAAACAATCCTGAAAAAAGGATCATAATTTTATAAGAAATGTTTCTACATATTAGAATCAGCACATTAGCATAATTTCTGGAGGATGATTTAATATATTTAAACCGATATGTTTTATTTTTCAATCCCATTTCACAATATTCCTGATTTTACTGGATTTAAAATCATTTAATTTCATCCTTGGTGAACACCAACTGTATTTTAATCTTTCCTTTTTATATTCTGACTAGTTGTTGACTGATACAGATTCACTGGTGCTTGCGATCTGCACACACAGTTACATCATTGGTTAAGATCATGATATAATCCTCACTGTTGCTCTCATTTTCAG
Seq C2 exon
AAAGTCACCTATAATACCAAGAAGCCAACATATGACTTGCGGTCCGTAGCGGAGGTGGAAGGACCTGGAGTAAAGGGTGGAAATAAATCAGAATGGAATCAGCAGATCATTGTACCTGCTCTTCCTCACTCCTCCCTGAGCGATGGAAACCTCATCCAAATCTGCTATTACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068148:ENSDART00000098360:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.305
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAGCTCATCCTCCGTAACC
R:
ATTTGGATGAGGTTTCCATCGCT
Band lengths:
342-1997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]