GgaINT0124234 @ galGal4
Intron Retention
Gene
ENSGALG00000008475 | ARRDC1
Description
arrestin domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026646]
Coordinates
chr17:1978192-1978905:+
Coord C1 exon
chr17:1978192-1978374
Coord A exon
chr17:1978375-1978728
Coord C2 exon
chr17:1978729-1978905
Length
354 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTATTCCTGTCTGCACAGAAA
3' ss Score
7.97
Exon sequences
Seq C1 exon
CAGCCCAACACTATGTCCGTTACCAAGAAGTTCAACTACAAGCTCGTGAAAAGTGGCAATGTTATCCTGACAGCCACCTCAGATCTGAAGGGGTACATTGTGGGGCAAGTGATCCAGCTCCGCACAGACATAGAGAACAAGTCAGGTCGGGACACCGGGGCTGTGGTAGCCAGCCTACTCCAG
Seq A exon
GTAAGCATCCAAAAGGATGATATTTTGGCTATGCTGATACTCCACCTCGCCAAGGCCAGTGTGAAGCTGGCTGTGAGCATTGCTGCTGTTTTTGTCTGGAAGGTGGCAGTTAGTAGTCTGGACCTCTGGCTGGCTTTGATTCCCTCTGCCTTCCTGGAGAAAGAGGTGGTAGGACTTGTCTTGCTTATAGCAGCTCAGTCCATAATGCAATGATGAGTTAATCCTGCCCTGTAATATGTGTATTACATCTGTACTTGTTTGACAGAACAACTGGGTGATTTTTGTGTTCTGCCTTACTTTTGTGGGGGACATCTGCAGTCTTTCTGCTAGCTGTTTTTATTCCTGTCTGCACAG
Seq C2 exon
AAAGTGGCTTACAAATCCAAGCGTTGGATTTACGACCTGAGGACCATCGCAGAGGTGGAAGGTTCAGGAGTAAAAGCCTGGAAACATGCAGAATGGAAGGAGCAGATCCTTGTTCCAGCACTGCCCCAGTCCATTCTGCAGGGCTGTAGCCTCATACATATCGATTACTATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008475:ENSGALT00000013811:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCAACACTATGTCCGTT
R:
TCGATATGTATGAGGCTACAGC
Band lengths:
347-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]