MmuINT1004762 @ mm10
Intron Retention
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24926272-24926727:-
Coord C1 exon
chr2:24926545-24926727
Coord A exon
chr2:24926449-24926544
Coord C2 exon
chr2:24926272-24926448
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ACAGTCAAGTCTTTCCTCAGAAG
3' ss Score
1.61
Exon sequences
Seq C1 exon
CAACCCAATGTGGCCTCCACTACCAAGAAGTTCTCCTATAAGCTGGTGAAGACTGGCAATGTGGTTCTCACAGCTAGCACTGACCTTCGTGGCTATGTGGTGGGACAGGTGCTGCGGCTGCAGGCTGACATTGAGAACCAGTCAGGCAAGGACACCAGCCCTGTGGTGGCCAGCTTGCTACAG
Seq A exon
GTCAGAGCCATCTGGCTTCCTGAGCCTGTCCCTTTCCCATGAAACAGAAGGGGTGGGTGCTGGCCTGCCCAAGCTCACAGTCAAGTCTTTCCTCAG
Seq C2 exon
AAGGTATCCTATAAGGCCAAGCGCTGGATCTATGATGTGCGGACCATTGCAGAGGTGGAGGGTACAGGTGTCAAGGCCTGGAGGCGTGCTCAGTGGCAAGAACAGATCCTGGTGCCTGCCCTGCCCCAGTCAGCCCTGCCTGGCTGCAGCCTTATCCATATCGACTATTACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972:ENSMUST00000028349:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCGTGGCTATGTGGTG
R:
CCTTGACACCTGTACCCTCCA
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types