BtaINT0021998 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008973 | ASB6
Description
Bos taurus ankyrin repeat and SOCS box containing 6 (ASB6), mRNA. [Source:RefSeq mRNA;Acc:NM_001205661]
Coordinates
chr11:100056005-100057352:-
Coord C1 exon
chr11:100057240-100057352
Coord A exon
chr11:100056187-100057239
Coord C2 exon
chr11:100056005-100056186
Length
1053 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACT
5' ss Score
5.86
3' ss Seq
GGTCCTCTCTCCTGCCCCAGGCC
3' ss Score
8.98
Exon sequences
Seq C1 exon
ATGCCGTTCCTGCATGGCTTCCGGAGGATTATCTTCGAGTACCAGCCGCTCGTGGATGCTATCCTGGGCTCCTTGGGCATCCAGGACCCCGAGCGGCAGGAGCCCCTGGACGG
Seq A exon
GTAACTCGCGCCCTCCCCCGCCTCAGACCGGCGCGGCACCCCTTTCCTTGTCGCCATAAATATGGCGGGCGGTGTCCTCATCTGTCAGATGAGACCGAGGGCGGGCGGGGATGGGTGGAGGCGGCCGCGGCCCGCTCAGGGAGGGCCGTGGGGCTGGGTGGCGGCAGGGCCTCTGCCTCAGCGCCCCACCCTGCGCCCTGCCTGTCCTGTGCCCTCTACCTGGAGTTGCAGAGGGGCAGGGTGTAATCGGTAAACGCGGCGCGGGATGAGCTTTCTGTAGCCCCGAGTTTCCCGTTTGGTATAGACAGGCGCGGGTCTGTCATACATGAACCTGTGGGAAGGCTGTTCAGAAAGCATCGTTTAGAGGCTACATTGGCGAGCTAAAACCCTCAGCCTTCGTGGTGATCGTGCTCCCAGAGAGGAGAGGCTGACAGTGATTAAAGTGGTATATACTGCCTTACGTGGAGCGGAGAAAAGAGCCGAGGAGAGGGGGATCGGGGGTGTGTTTCGGGCATCAGTTGGAATTGGCGAGGGGGGTAGGCGGGTTGGGGCTGTGGAGCAAAGGGCTTTCTGGGTCCCTCTGCCTTCGGTGGACCGAACGTCTCTGAGTGTGATCGGGCTTCGGGAGGTCTGCTGACCGCCCTGGCTGCGGGATGGCCTGAGCTGGGGTGCAGCACCTTCTGCAGCCCCGGGTCAGTCGGTGTCTGGTTCTTGCCCTTGGCCGCAAGGGTTCCCTTCAGTGCTGACAGCGCAGGTGTATGAGGCTTTGTACCCAAGCCAGGGGCCAGGTTGTATGGGTAACTTGGAAGGAGGTTGATGACAGCCCCAATCCTTTCTCAGCAAACCTGAGGAGTCTGCTCCATTGAAAAGATCTTGCTTGGTCCTTTCTCCCACCCTTTTCGGAAGAGACTTTCTGCCCCATGGAGCCAGGGCCCTGCCTGGGGTGGGGGTGGGGGCGAAGTGGGGGGTGACTGCAGGAGACCAAAGGCCACCTACCCGCAGGGTGCCAAGCCAGCTTGTCCCACCCTCAGCTGGTCCTCTCTCCTGCCCCAG
Seq C2 exon
GCCCAGTTATGCCACCAGCGAGGAGAGCCGCATCCTTGTTCTCACCGAGCTGCTGGAAAGAAAAGCCCACTCTCCATTTTACCAGGAAGGCGTGAGCAACGCCCTGCTGAAGATGGCCGAGCTGGGGCTGACACGCGCAGCTGCCGTGCTCCTGCGGAATGGAGCCAACCTCAACTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008973:ENSBTAT00000011810:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(62.0=91.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCCTGCATGGCTTCC
R:
AGTTGAGGTTGGCTCCATTCC
Band lengths:
286-1339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development