GgaINT0125882 @ galGal4
Intron Retention
Gene
ENSGALG00000004378 | ASB6
Description
ankyrin repeat and SOCS box protein 6 [Source:RefSeq peptide;Acc:NP_001025859]
Coordinates
chr17:5650565-5651372:-
Coord C1 exon
chr17:5651138-5651372
Coord A exon
chr17:5650747-5651137
Coord C2 exon
chr17:5650565-5650746
Length
391 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTATTTTCATTCATTTCCAGCCA
3' ss Score
8.59
Exon sequences
Seq C1 exon
AGGAGGGGGCGGCCCCGTGGAAAGCAGGCCTGGCTCGGCCTGCGGGTTCCTGAGTGTGGGCAGGCGGCACTGCCATGCGGGAGGGCCCTGCGGGGCCTGTGTGCAGAGCACAGCGCTGGAGGATGCCTTTCCTACACGGCTTCCGCAGGATCACTCTCGAGTACCAGCCCTTGGTGGATGAGATCTTGGCGTTGCTGGCGCTACAGGATGCAGAAAGGCAGGACACGCTTGAAAG
Seq A exon
GTAACTGACCGGGCTGCAGGCAGAGCTCTGGGGATAAACACCTGCATGGTGGTGGTGGTTGGAGCTCAGCAGTATTGGCACTGGGAACAAACCCTGTCTCAGTGAGCACTTTTTTCTGAGGACCATTCTCTTTCTGTCCTTTGGGAACATGGAATGGAGCAGAGCAAACGTGAGGCTGTGCGTGCTCCTCAGGAACTGCCTGACCCACAGCAACAAAAGCTCACCAGGGTTTCAGCTGCACTCCAGTACTGCTGTATAACCCTGTAGCCAACAGTTTACAGGACAACAGGAGAAACCAGGGCTTTTTCTCCCTCCCTACTTTGACCCTTACAAGCACATAGGAGACACATACTGCCCTGGTGAGTAACTGGTTATTTTCATTCATTTCCAG
Seq C2 exon
CCATGCCTGCTTGGGCAGCAATGGAAGCCAGCTCTCAGCAATGAGACAAGTCTTGGAGAGGGAAGCCCACTCCCCATTCTACCAGGAAGGTGTGAGCTATACTCTGCTGAAGGTTACTGAGCTGGGGCTTGTCGAGGCTGCAGAAGTACTCCTGGAGTTTGGTGCAGACCTCAGCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378:ENSGALT00000006983:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(2.0=3.7)
A:
NA
C2:
PF127962=Ank_2=FE(62.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGTTCCTGAGTGTG
R:
AGTACTTCTGCAGCCTCGACA
Band lengths:
346-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]