RnoINT0021715 @ rn6
Intron Retention
Gene
ENSRNOG00000024786 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:RGD Symbol;Acc:1308445]
Coordinates
chr3:9662940-9664318:-
Coord C1 exon
chr3:9664048-9664318
Coord A exon
chr3:9663116-9664047
Coord C2 exon
chr3:9662940-9663115
Length
932 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
TTTTCTGCCTCTTGGTGCAGTTA
3' ss Score
8.26
Exon sequences
Seq C1 exon
CGACTGCTCACCGGCGCGGGGTCTGAACCGGTAGATCGGGAGGTGGTGGCGAGTGGGTATCCGGACGCGCGGCCGACGCCATGCCGTTCCTGCACGGCTTCCGCAGGATCATCTTCGAGTACCAGCCCCTGGTGGACGCCATCCTGGGTGCCCTGGGCATCCAGGATCTGGAGCGGCAGGAGCCTCTGGATGAGTGAGTCGCTGCGGTCCCCTGTGGTTGTCGCGGCGGGAGCGGGAGCTGCGTGGCTGCGAGCTCGAGCGCCAGCCTGAG
Seq A exon
GTGGGCTCGCAGCGTCTTGCAGGGCAGAGGGCCAGGGCCCCGGAGCCGCTCCCTGTGCATGGATGCCGGAGGAGAGGTCCTGGCTGGGACCGACAGCGCTTTTTGCAGACAGCAGGCCTCTTCGAGAGTCTCTGGGGGAAGCAAGCCGGTGTGGTCCGTGTGCCCTGTGCAGACTTCCTTGGGTACTAGGAGCGCTACGCCTTCGGAGTGCTTGTGCCACCGAGACAGACCAGCACCCAGACCAGCACCGTGGGGTGGGATGCAGGGAGTAGGGCGGGGCAAAGGAATAGCACTGGGAGAGTCATGAGCCGGAATTGCAGACTTTCAGTCTCAACAAGGATGTCTTTTCTAAACCACACTAGCTCGCTCTTCTGCGGCCTACTCTGTAAATGTAGTGCCAGGCGGTTTCCAGAACTCGGAGGCGGGGCAGCAGGGCTGCACAAGGCGCTACTGCCCTCCCTTGGCGGAAACTAGCATATTCAAGAAGGCCGCCCTAGATAAGCGTTTGGTCAGATCTTGGATCCCACCTGTTGCAAGAGAAGAGGTCTGGTGGGTGAGATTAGGGAGAAGAGCAACTGAGGAGCATTGGGACAGGAAGGTGACTCTGAAGGTGGTGTCTGAGCCATTGTCCAGAGCTGGGGCAATGTATGGAGTAGTGTCCAGGCCCAAGTAGCACTTAGTAGGTAGTTTTGTCTAGGAAGGGTGAGAGCTTTAGGGCCACCCTCGTGGTGGTATGAGAGAGGACGGGACAGAGCCAGGCCTTTGACAGCAAGCTGAAGGATGGCTTTGAAGTCACTTCACACATTTGACCAAGAAAGAGTTGTGTCCCACAGAGCATGGGCAGTTTGTGTGGGTGATTGTGGAAGGGCACACAGGCTAGGGCCACTGGTCCCCAGGAGTTCCCACTTGGTCTTTTCTGCCTCTTGGTGCAG
Seq C2 exon
TTACGCTTCCAGTGAGGAGAGCCGGATCCTGGTCCTTACGGAGCTGCTGGAGCAGAAGGCCCACTCTCCTTTCTACCAGGAAGGTGTGAGCAATGCTCTGCTGAAGATGGCCGAGCTGGGCCTGACCCGGGCAGCTGCGGTCCTCCTGCAGAGTGGGGCCAACCTCAACTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024786:ENSRNOT00000034927:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PU(39.7=95.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGATCGGGAGGTGGTGG
R:
GGCCATCTTCAGCAGAGCATT
Band lengths:
354-1286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]