MmuINT0019642 @ mm10
Intron Retention
Gene
ENSMUSG00000039483 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:MGI Symbol;Acc:MGI:1919573]
Coordinates
chr2:30826923-30830333:-
Coord C1 exon
chr2:30828074-30830333
Coord A exon
chr2:30827099-30828073
Coord C2 exon
chr2:30826923-30827098
Length
975 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TTCTGCCTCTTGGTGCACAGTTC
3' ss Score
6.84
Exon sequences
Seq C1 exon
AGCCCAGTGCTAGGACCCGAGGAGGGCTCCAATAAATGCAAGTTAATTCTCATGTGTTCTATGTGTATTTACACTAAGTATGCATGTATCCACACGTGCTGTATGTGTGTAGAGGTCAGAGGACAACCTGTAGGTGTCTGTTCTCTCCCTCTGCCATAGGGTCCTAAAGACTGAACTCAGGCCACAGGGCTTGGTGGCAAGCCTCCACCTCCTGAACCAGCTCAGCAGCCCAGTTCTTCTTACTCTGCCTGTCCCTTCTCTCAGACACTGGTGACATCAAGATGCCTTTCATTGGACCTCGGCCTGTGAGAGCCAGGCAAGTGATCAAGTCAGAGGTGAAGACTGGCTGGAGAGACGGATCAGCCATTAAAGGCTAGGCTAGGGGAAGATGGTGAGGCCAAGGCCAGAAGGACCACACCTAGATTCACCTGTTGCATGGGGTTTGTATTCTGCCCTCTGAGTTCCACTGAAGCTCTAGTCTGGGGACCTTCAAAGTGACCTTATTTGGAAGAAGGGTCTTGTAGATGTCAGGAGGCTAAACTACTGCTATTCTGGATCAGGGCAGCCTCCAAAGCCAAGTGCTGGAGCCACTGAGGAAAGGAGAAGTGACCTGGACAAAGGCACAGACCCAAAGCAGGAAGCCACGATGTCCAGTCTTCATGGTGCTGGGTATGGAACTCGAGGCATTCTGCTCGGTGAGCCAACTCCCAGGCCCAAAGGGGAACTTTTTTTTTTTTTTCCCCATGAATAGGGATGTTTTGCTTGCATGGCCATATGTGCATCACTTTTGTGCCTGTGCCCACAGCGTCCAGAAGAGGGCACCAGATCCCCTTGGCCTAGAGTTATGGGTGGCTGTGAGCCACTATGAGGGTGTTGGGAGCTGAACCTGGGCTGATCAAGATCTCTCCAGTAACCTGCCACCCTCCACCCGACTCCTCCCCCCTCTTGGAGATAGAGCCTCACTATGTAGTCCTGGCAGGCTAAGAACAGAACCTAGGTCCTTTGCAAGAGCAGCCAGTATTCCTAATTGCTGAGCCATCTCTCCAGCCCCTGTACAGATTTTTTCCCCATTATTCCCTTAACAACCCAATAAACAATGACCAACCTGGTGTTTACTCTGTTGGGTGCAGAGTCCCATAGAGCTGAAATAGGTCATGAGAGGAGCTGTGTACCCATTCTGTGTAAGATCCTTGGCCACTGGGTTTGGTGTCCTGGGCTATCCTGGAACCAAGCCTAGCATCCCAACACTTGAGAAGTGGAGGCAGGAAGGCTCTTGGTTAAAACAAAGAAGAAATTTTGTTCCAAGCCAGTAACTCTATGGCAGATGGCAGGTGCCAAGCAGAGAGAACACAAGCCCCCATAAGGGATTGGAGCTACACCTATGATGGTGCAGCCTCAGGACCATTGACACCTCCCCATAACTGACCTTTTTAGAGTCATCAGGGCCTTGCCGCAGGACTCAAAGTTGCAGCCACTCAAATTTGCGTAGGGGGACGCTACCTGGTACAGTCCTTTCTGCTATGTCAAAGCTTCCTCCTGCTCAGGGTCTAGGCAAGTGATATTATGCCAATTTTCCAGATCAGGACATGAAGGTTCACAGAGTCCCTCCAGTGAAAAGTGGGAAAAGTGGGCAGCCTGTTTGGCTAGGCGTCAAGGGACAGAGAATAAGGAACTGCCCCCAGCGTCTGTGGGGAAGAGTTGGGGTGCAAGATCCTCATTACGCCACTTGGTCTACACAGTGGAGAAACTGAGGTGGTTGCAGCCTTTCCTTAGAGAGTGGCCAAAGTCAAGTAGGCTGCAGAAAGTAGTGTTCAGGCTCCGAATAGGGCCTGTGTCACCTCGGATTGGAGCCAGTCAGTAGCGGGGCCGCATGCCCCGTCGGAGCTCAGACGCCCTTCAGCGGCCTCGCGGGGAATTTCAGTGCGGGGCGGAGCCGGACAGTGATGATCGCCGCGAGGTCCTCCCCGGCGGCAGGGGGCAGTGTGACTCACATGCTCCCTCAAAGGCCCGCACGGACCGGAAGTAGGAGTGGTAGGATAACTTCCGGTGCGGAACTGGGGCCTGGGAGGATTGCTCACCGGCGCGGGGTCTGAACCGGTAGATCGGGAGGTGGTGGCCTGTGGGTGTCGGAACACGCGGCCGACGCCATGCCGTTCTTGCACGGCTTCCGCAGGATCATCTTTGAGTACCAGCCCCTAGTGGACGCCATCCTTGGCGCCCTGGGCATCCAGGATCTGGAGCGGCAGGAGCCCCTGGATGA
Seq A exon
GTAAGTCGCTGCGGTCCTCTGTGGTTGTCGCAGCGGGAGTGGGAGCTGCGTGGCCGCGAGCTCGAGCTCCAGCCTGAGGCGGGCTCGGAGTGTCTTGTAGGGCAGAAGACCCGGGCCTCTGCTGCCTGTGCATGGATGCTGGAGACGTCCTGGCTGGGGCCGACCGGACTTTCGGCAGACAGCAGGCCTCTCCGAGAGCCTCTGGGGAAGCAAGCCGGTGTGGTCCGTGTGCCCTGTGCAGACCTCCTTGGGTACTCGGAGCGCTACGCCTTCGGAGTGCTTGTGCTACAGAGACAAGCGAGCACCCAGACCGGCATCGCGGTCTGAGATGCAGAGTAGGGTGGGGCAGAGGAGCTAGCAGTCTCACCAAGGATGTCTTTTCTAAACCACATCAGCCCTTTCCTCTGCGGCCTACTCTGTAAATGCAGTGCCAGGCGTTTTTAAGAACTCGGAGGCGGGGCCGCAGGGCTGCACAACAAGGCGCTACTGCCCTCCTTTGGCGGAGCCCAGCATATTTAGGAGGGCTGCCCCAGATAAGCGTTTTGTGTCCGGGCGTTGGTCAGATCTTAGGGCCCACCTGTTGCAAGAGGTCTGGTGGGTGAGATTAGGGCGAAGAGCAAGTAAGGCGCGTCGTGGCCAGGTGACTCTGAAGGTGGTGTTTGGGCCGTTGTCAGAGCTGGGGTAACATATGGAACAGCGTCCAGGCCCAAGATGCACTTAGTAGGTAGTTTTGTCTAGGAAGGGTGAGAGCTTTAGGGCTACCCTCAAGGTGGTGTGAGAGAAGATGGGGCAGAGCCAGCACTTTGACAGCATGCTGAAGGATGGCTTTGAAATCACTTAATGCTTTTGACCAAGAAAGAGTTGTGCCCCACAGAGCATGCGCAGCTTGTGTGGATGCTTGTGAAAGGGCACACAGGCTAGGGCCACTGGCCCCCGTGAGTTCCCACTTTCTCTGTTCTGCCTCTTGGTGCACAG
Seq C2 exon
TTCTGCTTCCAGCGAGGAGAGCCGGATCCTGGTCCTCACGGAGCTGCTGGAGCAGAAGGCTCACTCTCCATTCTACCAGGAAGGCGTGAGCAATGCGTTGCTGAAGATGGCTGAGCTGGGCCTGACCCGGGCAGCTGCTGTCCTTCTGCAGAGTGGGGCCAACCTCAATTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039483:ENSMUST00000041726:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(62.0=95.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGAAGTAGGAGTGGTAGG
R:
GCCATCTTCAGCAACGCATTG
Band lengths:
356-1331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types