MmuINT0019642 @ mm9
Intron Retention
Gene
ENSMUSG00000039483 | Asb6
Description
ankyrin repeat and SOCS box-containing 6 [Source:MGI Symbol;Acc:MGI:1919573]
Coordinates
chr2:30682443-30683820:-
Coord C1 exon
chr2:30683594-30683820
Coord A exon
chr2:30682619-30683593
Coord C2 exon
chr2:30682443-30682618
Length
975 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TTCTGCCTCTTGGTGCACAGTTC
3' ss Score
6.84
Exon sequences
Seq C1 exon
AGGATAACTTCCGGTGCGGAACTGGGGCCTGGGAGGATTGCTCACCGGCGCGGGGTCTGAACCGGTAGATCGGGAGGTGGTGGCCTGTGGGTGTCGGAACACGCGGCCGACGCCATGCCGTTCTTGCACGGCTTCCGCAGGATCATCTTTGAGTACCAGCCCCTAGTGGACGCCATCCTTGGCGCCCTGGGCATCCAGGATCTGGAGCGGCAGGAGCCCCTGGATGA
Seq A exon
GTAAGTCGCTGCGGTCCTCTGTGGTTGTCGCAGCGGGAGTGGGAGCTGCGTGGCCGCGAGCTCGAGCTCCAGCCTGAGGCGGGCTCGGAGTGTCTTGTAGGGCAGAAGACCCGGGCCTCTGCTGCCTGTGCATGGATGCTGGAGACGTCCTGGCTGGGGCCGACCGGACTTTCGGCAGACAGCAGGCCTCTCCGAGAGCCTCTGGGGAAGCAAGCCGGTGTGGTCCGTGTGCCCTGTGCAGACCTCCTTGGGTACTCGGAGCGCTACGCCTTCGGAGTGCTTGTGCTACAGAGACAAGCGAGCACCCAGACCGGCATCGCGGTCTGAGATGCAGAGTAGGGTGGGGCAGAGGAGCTAGCAGTCTCACCAAGGATGTCTTTTCTAAACCACATCAGCCCTTTCCTCTGCGGCCTACTCTGTAAATGCAGTGCCAGGCGTTTTTAAGAACTCGGAGGCGGGGCCGCAGGGCTGCACAACAAGGCGCTACTGCCCTCCTTTGGCGGAGCCCAGCATATTTAGGAGGGCTGCCCCAGATAAGCGTTTTGTGTCCGGGCGTTGGTCAGATCTTAGGGCCCACCTGTTGCAAGAGGTCTGGTGGGTGAGATTAGGGCGAAGAGCAAGTAAGGCGCGTCGTGGCCAGGTGACTCTGAAGGTGGTGTTTGGGCCGTTGTCAGAGCTGGGGTAACATATGGAACAGCGTCCAGGCCCAAGATGCACTTAGTAGGTAGTTTTGTCTAGGAAGGGTGAGAGCTTTAGGGCTACCCTCAAGGTGGTGTGAGAGAAGATGGGGCAGAGCCAGCACTTTGACAGCATGCTGAAGGATGGCTTTGAAATCACTTAATGCTTTTGACCAAGAAAGAGTTGTGCCCCACAGAGCATGCGCAGCTTGTGTGGATGCTTGTGAAAGGGCACACAGGCTAGGGCCACTGGCCCCCGTGAGTTCCCACTTTCTCTGTTCTGCCTCTTGGTGCACAG
Seq C2 exon
TTCTGCTTCCAGCGAGGAGAGCCGGATCCTGGTCCTCACGGAGCTGCTGGAGCAGAAGGCTCACTCTCCATTCTACCAGGAAGGCGTGAGCAATGCGTTGCTGAAGATGGCTGAGCTGGGCCTGACCCGGGCAGCTGCTGTCCTTCTGCAGAGTGGGGCCAACCTCAATTTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039483-Asb6:NM_133346:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(62.0=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTAGATCGGGAGGTGG
R:
CTTCGAAATTGAGGTTGGCCC
Band lengths:
342-1317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: