GgaINT0125882 @ galGal3
Intron Retention
Gene
ENSGALG00000004378 | ASB6
Description
NA
Coordinates
chr17:6205174-6205981:-
Coord C1 exon
chr17:6205747-6205981
Coord A exon
chr17:6205356-6205746
Coord C2 exon
chr17:6205174-6205355
Length
391 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTATTTTCATTCATTTCCAGCCA
3' ss Score
8.59
Exon sequences
Seq C1 exon
AGGAGGGGGCGGCCCCGTGGAAAGCAGGCCTGGCTCGGCCTGCGGGTTCCTGAGTGTGGGCAGGCGGCACTGCCATGCGGGAGGGCCCTGCGGGGCCTGTGTGCAGAGCACAGCGCTGGAGGATGCCTTTCCTACACGGCTTCCGCAGGATCACTCTCGAGTACCAGCCCTTGGTGGATGAGATCTTGGCGTTGCTGGCGCTACAGGATGCAGAAAGGCAGGACACGCTTGAAAG
Seq A exon
GTAACTGACCGGGCTGCAGGCAGAGCTCTGGGGATAAACACCTGCATGGTGGTGGTGGTTGGAGCTCAGCAGTATTGGCACTGGGAACAAACCCTGTCTCAGTGAGCACTTTTTTCTGAGGACCATTCTCTTTCTGTCCTTTGGGAACATGGAATGGAGCAGAGCAAACGTGAGGCTGTGCGTGCTCCTCAGGAACTGCCTGACCCACAGCAACAAAAGCTCACCAGGGTTTCAGCTGCACTCCAGTACTGCTGTATAACCCTGTAGCCAACAGTTTACAGGACAACAGGAGAAACCAGGGCTTTTTCTCCCTCCCTACTTTGACCCTTACAAGCACATAGGAGACACATACTGCCCTGGTGAGTAACTGGTTATTTTCATTCATTTCCAG
Seq C2 exon
CCATGCCTGCTTGGGCAGCAATGGAAGCCAGCTCTCAGCAATGAGACAAGTCTTGGAGAGGGAAGCCCACTCCCCATTCTACCAGGAAGGTGTGAGCTATACTCTGCTGAAGGTTACTGAGCTGGGGCTTGTCGAGGCTGCAGAAGTACTCCTGGAGTTTGGTGCAGACCTCAGCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378:ENSGALT00000006983:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(2.0=3.7)
A:
NA
C2:
PF127962=Ank_2=FE(62.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGTTCCTGAGTGTG
R:
AGTACTTCTGCAGCCTCGACA
Band lengths:
346-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]