HsaINT0013197 @ hg19
Intron Retention
Gene
ENSG00000148331 | ASB6
Description
ankyrin repeat and SOCS box containing 6 [Source:HGNC Symbol;Acc:17181]
Coordinates
chr9:132402820-132404444:-
Coord C1 exon
chr9:132404166-132404444
Coord A exon
chr9:132403002-132404165
Coord C2 exon
chr9:132402820-132403001
Length
1164 bp
Sequences
Splice sites
5' ss Seq
CCGGTAACT
5' ss Score
6.39
3' ss Seq
CAGCCTCTCTCCTGTCCCAGGCC
3' ss Score
8.62
Exon sequences
Seq C1 exon
CTTCCGGCGGGGGCGCGGCTTGGACTGAGGAGCGGACCCGGCCGGGCGCAGGGGCTGGACTGGCGGAGCAGGTGGGGTCCGCGGCCGCCGGAGCGTTCCGGTCGGCGTCTGGGCATCTCGGCCTCGGCAGAAAGCGCGACGGCCCTGCTGCGCGGGGCCCGCGGCGATGCCGTTCCTGCACGGCTTCCGGAGGATCATCTTCGAGTACCAGCCGCTGGTGGATGCGATTCTGGGCTCCCTGGGGATCCAGGACCCCGAGCGGCAGGAGTCTCTGGACCG
Seq A exon
GTAACTCACCCCCTCCCGTGAGCTGGCCGAGGCCGCTCCGACCCCGCAGCGTCCCACTTTATCACCACAAGCCGGGCGGGGTGGATGCGTCCCCCTTGACAGAGGAAGGGACGGGCGGAAGCCGGGGTTGCGTGGCTCGGAGTGCGCGCTGCCCCGCGCGGATCCCACTCCTGCCCCTTGCATGGCGGAGACGAAGGGCGGGGAGGGCCCGAGGGCGGAGGCCCGCGGGTTGTCGCAGGGCCTGCGCCTCAGCCCCACCCTGTCGCCTGCCTGTCCTGTGCCACCCCCCGGCGTGGCAGAGGAGCAGGGTGGAATCCGTGAGGCCTCAGATGTTACCCCAGAGCAGTGTGAAGGTGGGCTTTTGTAGCAGAGTTTGCGTTTTTATAGACAAGAGCTGGTCTGTCGTGGACCTGCAGGAAAGGGGTCGGGAGCGAATCTGCATTCACTGCCCATGGTACTAGGCACCTGGGGTCCATCAGTGGCTCAGCAAAACCCCCGCCTTCTTGGCGCATGTGCTCCAGAGGAGAGACTGACAAGTAATTGTACGGCGGCACGCGAGGTGGAAGGGAGGGGAGAGCAGAAGGAAGGGGCTCGGCTCAGGTGTTGAGGGGGTTGTCAGTTGGTATTTCCAACACGTGGTAATGATGAGTCTCGCCATCCAGGGACTCTGGTGGAAACGTAGGCTTTCTTCATCAATATCAGCTGAAGGTCTCAATGTGAGGGGAGGGAGGAGGCTGTGTTGCTGTCCTGGCTGCAGGTGTTGCCGGGGCTGGGGTCCTGCGGGTTTGAGGATGGAAGGGCTTTCTGAGGAAGAAGCATCAAAGTCGGGCTTGGGCTCTTGGCCTCCAGGCTGGTGGTCCCTTCAGTCCCAGCAGCCCAGGTGTGTGAGGCTTTGTACCTAAGTCTGCGACCGGACTCTGGGCAACGCGGGAGGAGAGCGCAGACAGACCCAGCCCATTCTCCGCAAATCCCAGTCTGCTCCCGTATTAAGAGATGCAGCGTGGCCCTCTCTCTACTTCAGAGCTTCCCCCAAGCCCCTGTGACCCACAGAGCCAGGGCCCTGCTTGCTGATGATGATAGCAGGACTAAAGCCCACCAACCCACAGGCTGCGCGGTCACCCGGTCCCACAGCTGTGCCTACCCTCAGCCTCTCTCCTGTCCCAG
Seq C2 exon
GCCCAGTTATGTCGCCAGCGAGGAGAGCCGAATCCTTGTTCTCACTGAGCTGCTGGAGAGGAAAGCCCACTCTCCCTTTTACCAGGAAGGCGTGAGCAACGCCCTGCTCAAGATGGCTGAGCTGGGGCTGACGCGGGCGGCCGACGTTCTCTTGCGGCATGGGGCCAATCTCAACTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148331-ASB6:NM_017873:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(6.8=18.4)
A:
NA
C2:
PF127962=Ank_2=PU(63.2=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGACTGAGGAGCGGACC
R:
GCTCACGCCTTCCTGGTAAAA
Band lengths:
358-1522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)