BtaINT0025563 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73719513-73721465:-
Coord C1 exon
chr17:73721413-73721465
Coord A exon
chr17:73719654-73721412
Coord C2 exon
chr17:73719513-73719653
Length
1759 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CGACCCTTCCCCCGATGCAGGAC
3' ss Score
8.26
Exon sequences
Seq C1 exon
CCCTGCTGTACAAGCCCGTGGACCGGGTGACCCGGAGCACGCTGGTCCTGCAC
Seq A exon
GTGAGTCCCCGGGGTCCGGGGCCTCTGTGCCCCAGGGCTCTTGGCTTCTGCTGTCTTGGGGCTGGGGCCGCTGTTGGTCAGCTCTGCTCACCTGCCCTCTTTTCTGCCCTGCAGCTGTACTGAGCATGCAGGAATGAGTCGCCTCTCCTTTCCCGGGCTCCTGGGGTGGGGGTGGTCCGGGGCTCCCGGTGCCTCATCAGAGCAGGCACAGGTGGGGAGGGGCTCGAGAATGGAGACGCTCTCCCGAGGGAGGGGGCAGGGCACGGATGCCAGGTGCCCGCCTGGGCTGCGGTCGGACCACACCCTCCACCAGATGGACAGTGCGCGAGGGGGCCCGCCCAGCAGGGCTGCCCCTGAGGACAGCGGGGAGTCACTCACACGTTGTTAAGTGACCGTCATTCAGTATGTGCGTGCTCAGTCATGTCCAACTCTTTTCGACCCTCTGGACGGTAGCCTGCAAGGCTCCTCTGTCTGTGGGATTCTCCAGGCAAGGATACTGGAGTGGGTTGCCGTGCCCTTCTCCAGGGGATCTTCCCGACCCAGGGATCGAACCCACATCTCTTACATCTCCTGTGTTGGCAGGTGGGCTCTTTAACACTCGCGCCGCCTGGGCAGCCTGGTCATCTTAATACCGAGAAACAAAAGCAGAGGAAAGAAGGCCCCCAGCCCTACTGCCCGGCGACCCTATCCATAGGTCTTTAGAGCAAGTCTTACGCACGCATTTTTTAAAAAATGAACGACCAGCTCGCAGAAGCCTATAAAAGTGTGCGTTTCCTTTCCTGCTCCCTGCCCACAATGAACCCACCACCGGAGGGTCCTTAATGCTGACACACGTGACGTATTTTAATCGCTCGGAGACGTGCTGGGCCCGCCGTCCCGTGCCTGCCGTCGGCCCCCGTGTGCTGCGTCAGGCCGGTGGCGCCCCAGGCAGCTCTGCCTCGTTCTTCTCCGAGCTGTGCGGTTTCCCACGCACTGCTCGTTTCGTAATGTCTTACGTCTCAGAGACTTCGTGGATGGAGGCAGATGAGCTGAGATTGGCGGTTTGCACACGTTTGCCAGGCTCTGGCGCTGGAGCCCTGGAGGCCCTTCCTTTGACCCCCTGGCAGCGATGAGCTCAGGCCTGGCGGAGGGGCTGGCCTGGGACCCCCACGCCGGAGTCTCCCCTGACTTGTCTCGTCTCCCCAGGCTCTTGTTGCCATAGGATTTGGGAGCCAAGAGGGTTCTGTGTCTCTGGACCAGAGAGCCGTTGACTTTTGAGCTCAGATTATGGGCATCCCCCATGGAGAGGAATTCCCAGGCTCTGATCTAAGAGAGCAGGAGTCGGGAAGGTTGGGGGCTTTCTGCTGACCTCACACAGGCCAGCGCCCCCCGCGTGGTCTCGGTGGACACGAAACACATCCAGAGGCGGTTTCGCTTGACGCCACCACACACGAGGGGGCACCACTGGCATCGAGTGGGCAGAGGCCAGTGATGGTGCCACTCTCCTGCAGGGCATGGGGCCGCCCCCACCCAGAGTTTCCTGGCCCTGGCTGCAGAAACCTGCCCCAGAGCCGCAGTGTGGAGCCTCTCTCAGCAGCGTGCAAACAGCATTGGCTTGTGGGCTCCGCTCGGGACCTCCCCTAGGGGTGGTGCTCCACCACGCGGCCCCGGCTGTCAGAAGGGTGGCCCCGGGTCCCCCCCACCACCCAGCCCCAGCGTGTCTGCAGCTCGCACGGCCAATGGACCCAGCGGCTCTGACTCGACCCTTCCCCCGATGCAG
Seq C2 exon
GACTTGCTGAAACACACGCCCCCCAGCCACCCTGACCACCCGCTGCTGCAGGACGCCCTCCGCATCTCGCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAGAAGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566:ENSBTAT00000029392:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.447
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(1.2=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACAAGCCCGTGGACC
R:
TCCCTTCTTCACGGTCATGGA
Band lengths:
186-1945
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development