GgaINT0008626 @ galGal3
Intron Retention
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8864792-8865321:-
Coord C1 exon
chr15:8865269-8865321
Coord A exon
chr15:8864933-8865268
Coord C2 exon
chr15:8864792-8864932
Length
336 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GCTTGTGTTCTTGGTGGCAGGAT
3' ss Score
6.5
Exon sequences
Seq C1 exon
CTCTGCTATACAAGCCAGTGGATCGAGTGACTCGCAGCACACTTGTACTGCAT
Seq A exon
GTGAGTATCTGAAGGGTATCCTTCCAACTTTTCTCCCATTTCCTATTTTCTTTTCCCCTCATATTTTGCACCAAGCTGCAGGACTGCAAAAATTAAGCTGCTGTGCTGCGTAGGAGCCTCTTCTCCTTACACTGAGGAGAGGGAGCCCATGGTACCCTGGTAGCTCTCCAGTGATGTTACAAAGTGCAGAGTTGTCATTCTCTTCCTTTGTAGTTACAGTCTGTAAGAAGCCATGGAGTATCTTCTCTGATGGCTTCAGTTAGGAACTTAGCTCTGGGGGCACTGCTTTCCACTGCTGCTCATGATTCTGTTCTTTGCTTGTGTTCTTGGTGGCAG
Seq C2 exon
GATTTACTCAAGCACACTCCAGTGAGCCACCCTGATCATCCACTCCTGCAGGATGCCCTGCGGATCTCGCAGAACTTCCTTTCCAGCATCAATGAGGAGATCACTCCTCGTCGGCAGTCCATGACTGTAAAGAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695:ENSGALT00000010819:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.156
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(15.9=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(1.2=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATACAAGCCAGTGGATCGA
R:
CTCCCCCTTCTTTACAGTCATGG
Band lengths:
190-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]