MmuINT0024642 @ mm9
Intron Retention
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74605827-74608207:+
Coord C1 exon
chr10:74605827-74605879
Coord A exon
chr10:74605880-74608066
Coord C2 exon
chr10:74608067-74608207
Length
2187 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GCTCTCTCCACCCGGGGCAGGAC
3' ss Score
4.75
Exon sequences
Seq C1 exon
CTCTGCTCTACAAACCTGTGGACCGGGTGACGAGGAGCACGCTAGTCCTTCAC
Seq A exon
GTGAGTCCTCCCAGGGTGGCCTGGGTCCTCCCCTTGTCCTCAGGCCAGCTAGAGAAAGCCCCTTCACTTAGGTCTCCAATCTCAAGGTTAACATTGGCCTTTTGCCCACTGCTAACCTGTGCCCAGCTGTTCCATTACCACCTTTATTGAGAATGCAGGACCTCCTCGGAGGTTGCTGAGGGACAGAAGTAATAGTATCTCCAGGTGCCTCCACTGGGACTAATAGGGAAGGAGTATCCTATCACACAGGCAGGGGTCTGTAAGTGGGAACATTGTATCGCAGTGAAGTGTGTGAGCTGAGGTTTCCTGGGAAACCGGCAGGGTGGTCGGTGTTGACTCCCAGCCTTGCAGGGTAGGGTGCAGCAGGAGACCCACGACCAGGAGGTGCTCTGTACTGAGACACAAAATGAGAAAACAGAAACAACTTCGGCCTTGCTGCCCAGGGAAACCGGGTTAATAGCATCCATGCTGATGACAAAGTCTACCTAAATATTTGGTTCCCCTCCTACTACTGAGTCCCCACGAGAGGGCTTGTGTGTGAGCTAATGTGTGAACATCTTTTTCAGTTACTCAGAAAGTGTAATTGTTCACACTACTTCCTTCCTATTAATAACATAAATAGAGATTATTGTTTCTTTTTGGCCTAGGCTTTGATTTTTTTTACAGCTATATAGTATCCCATCATGCAGCAGGGTTTTGCTTTGTAGCCTAAGCTGGCCTTGAACTCATGGTTCCTCTGCCTCAGCCTCCTAAGTACTGGGCTTAGAGGTATATGCTACCATATCCGGCTTTATTAATCTTTTTTTTTTCTTTTTTGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTCGTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCCAGCTTTATTATTCTTTATCGTACCCTGATTGAAATTTTGGATGGGGCTGGAGAGATGGCTCAGCGGTTAAGTACTGCTCCTCTGGAGGACATTAAGCTTGATTCTTAGTCCCCACATCGGGTGAGTCACAGTCACCTGTAACTCCAGTTCCAAGGTAATCTGATGCCCCCGAGCTCTGTGAACAGGTGCTATCAGGGTGATAGATCTTGAGCAGCCGGTCACATCACAGTCGAGAGCAGAGAGATGATGAATGTGTGCATGCTGTGGACAGCTGCTGTCTCCACACTAAACACAATTTATAATGCCCCACTAGGTTTGGTACCGCCCACGGTGAACAGGTCTTCCCATATAATTAAGATACTTTCCCCACAGGTATGCCTACAAGCAATCCTGGTCTAGACAACTCCTCATGAAGGTTTGCTTTCTAGATTATTCTAGGATTGTGAAATAGTAACAATTCAGAGATCCTGGCCAGGTAGCCTATCCATTTGACTCTGTGATACTGTCCTCTGCCTATGGCTGTGATTGGTCCAGACATTGGGCATTTGTGTAACACAGAATACTGGTAGGGAAAGCAGCTGCTTAGGAGGGATGGGAGGAGAAGTGGACCTACTCAGTCTTTCCAGGTTCTCTTTGTAGTTAGGATTGCAAGTTGACAGGGGAAGGGGTTCTCTGAATCAGGGAGCTGCTTACCATGGGCAGTATTTAGTATGTAAATTAGTAATGTTTCTGTCTGGTTAGGAAGAAGGACTGGCGCTCATCTGAGGGAAGGGGAACCTGGAGGAACTAGGGCCTTTCTCCCAGTCTTGTCTAGGCCAGGAGTTCAGGGCCATAACCAGTTCTGCCTTCAGGATACCAGCATCAATGGCCAAAGATATTTGGCCATGACAGTTGAAAATGAGGATGTTATGGGTACCTAGTGCATGCAGTGGCCTGCAGCATTGCCAAATGTCTGTGCCACGCAGGACAGCCCTTTTTATCCCACTATAATAAAGCATTCATCTAGCCCCGGTGTTAATAATACCAAGGGCCAGAATCTCTACCCTAGGTCTTTATAATGATAGTTCCTTCTTACTGAGCTCATGGGCACACCCTTGGGGTGAACGCCTGCTTCCAAGACAGAGCTCACTGAGGTGCTCTTAGTAGGCCTGCAGCTCTGAGCTGCACTCCGTGTGACAGGATTGTTTCACACAATGGTCTCTGCCGATCCTGTTCTGACTAACTCTGCTCTCTCCACCCGGGGCAG
Seq C2 exon
GACTTGCTAAAACACACCCCGTCCAGCCATCCCGACCATTCCCTGCTGCAAGACGCCCTCCGAATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGACAGTCCATGACGGTGAAAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-Bcr:NM_001081412:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.4=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: