RnoINT0025285 @ rn6
Intron Retention
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14461381-14463673:-
Coord C1 exon
chr20:14463621-14463673
Coord A exon
chr20:14461522-14463620
Coord C2 exon
chr20:14461381-14461521
Length
2099 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GGTCTTCCCACCGGGAACAGGAC
3' ss Score
3.43
Exon sequences
Seq C1 exon
CTCTGCTCTACAAACCTGTGGACCGGGTGACGAGGAGCACACTAGTCCTTCAC
Seq A exon
GTGAGTCCCATTGGGGAGCATGGCATCTGCCTCCCAGGGAGGCCAGGGTCCTCCACTCATCCTCAGACCAGCTAGAGAAGGCCCCTTCACTGGGTCTCTTGTCTTGAGGTTAATGCTGGCCTTTTGCCGGTCTCTAACCTGTGCCCTGCTATTCTACTGCCAACACCTTTATTGAGAATGCAGGACCTTCCCAGAGGTGGCTGGGGGACAGAAGTGCCCCCAGTGGAACAGACAGGGAGGGCTTATCCTATCCCACATGGGCAGGGGTCTGTAAGTGGAAATGTGGCATTGCAGCGAAGTGTGTAAGCGTGTGTAAGCGGAGGTTTCATGGAAAATGGGCAGGGCAGGGCAGTTGGTGTTACCTCCCACCTCGCAGTGTAGGGCACAGGGGGAGACCCACCACCAGGGGGTTCTCTGTACTGAGAAAACAAAACAGAAGCTCCCCATGCCAAGGGAAACCTGTTAACAGCATTCATGCTGACAAAGCCTACCCAAATATTTTGTTCCCTCCCACTAAGGAGCCCCCACTAAGGGCTTGTGTGTGAACTAACGTGGTGAATATCTTCTTTTAATTGCTCAGAAGGTGCCACACTGTAAGCGTTCACACCACCTTCATCCTATTAATGACATAGATGGAGATTTTTGTTTCATTTTGGCCCAGGCGACTTTGCTTCATTTGTTACAACTATGTAGCATTCCACAGTGCACCCGGGCTTTGCTCTGTAGCCTAAGCTGCCCTGGAACTCATGGTTCCTCTGCCTCAGCCTCCTAAGTACTGGGCTTAGAGGTCTATGCTACTGTATCCAGCTTTTTTGTTCTTCATGGAGCTCTGATGGAGTTTTGGGATGGGGCTGGAGGGATGACTCAGCGGTTAAGTACTGCTCCTCCAGGGGACGTCAAGCTCGGCTCTTAGTACCCACGTTGAGTGAGTCACCGTCACCTGTAAGTCCAGCTCCAGGGGAATCTGATGCCTCTGAGTTCTGCACACAGGAGCTATCAGGGTGACAGATCTTGAAGCAGCCAGTCCCATCGCAGTCGAAAGCAGATGATGAATGTGTACGTGCTGTGGCCAGCTAGCTCTCTGCTCTTACACAGCTCGTGATGCCCCAACTAGGTTCGGCGCCGCCCACAGTGGATAGGTCTTCCCCTGTAATTAAGACACTTCCCCACAGGTATGCCCACAAGCCATCCTGGGTCTAGACAACTCCTCATGAAGGCTTTCTTTCTAGACGATTCTAGGATTGTGAAACAGTAACAGTTCACAAGTCCTGGCCAGGTGGCCCGTCCATTTGACTCTGAGATGCTGTCATCTGCCCGTGGCTGTGACTGGTCCAGACATTTGTGTAGCACAGAATCCTGGTAGAGAAAACAGCTGCTTAAGAGGGATGGAGGAAAGGTGGACCTACTCATCTCTCCAGGTTCTCTTTGTAGTTAGGGTTAGGAGTTGAGGGGTGGGGGTTGTTTCTCTCAATCAGGGAGCTGCTTACCATGGGCAGGAACAAAACTGCCCTTGTAGTATATAAATTAGCAATATTTCTGTCAGATTAGGAAGAAGGGCTAAGGCACTCATCTGAAGGAAGGGGAACCTGGAGGAACCAGGGCTTTCTCCCAGCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCCAGGAGTTCTGGGCCATAATCAGTTCTGCCTTCAGGATACCAGCATCAATGGCCAAAGACATTTGGCCATCAGAGCTGAAAATGAGGATTTAGAGGCATCTAGTGCACCCAGAGGCCCTCAGTGATGCCAAATGTCTATACCACACAGGCATTTTTATTCCACCATAAAGCATTTATCTAGCCCCAGTGTTAATAATACCATGGGCCAGAAACCCTGCCCTAGGTTTTTATAATAATGACAGCTTCTTCTTCTTACTGGGCACATGGGTATGCCATTGGGGCAGGTGTCTACTTCTAAGAAGAAGCTCACTGACAGTAGGCCTGCAGCTCTGAATTGCACGCAGTGTGACTGGATGGTTTCACACCGTGGACTGTACCAGTCCCGTTCTGACTAACTCCGGTCTTCCCACCGGGAACAG
Seq C2 exon
GACTTGCTAAAGCACACTCCATCCAGCCATCCCGACCATTCCCTGCTGCAAGATGCCCTCCGCATCTCTCAGAACTTCCTGTCCAGCATCAACGAGGAGATCACGCCCCGCCGGCAGTCCATGACCGTGAAAAAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304:ENSRNOT00000001766:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.234
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]