GgaINT0008626 @ galGal4
Intron Retention
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8609133-8609662:-
Coord C1 exon
chr15:8609610-8609662
Coord A exon
chr15:8609274-8609609
Coord C2 exon
chr15:8609133-8609273
Length
336 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GCTTGTGTTCTTGGTGGCAGGAT
3' ss Score
6.5
Exon sequences
Seq C1 exon
CTCTGCTATACAAGCCAGTGGATCGAGTGACTCGCAGCACACTTGTACTGCAT
Seq A exon
GTGAGTATCTGAAGGGTATCCTTCCAACTTTTCTCCCATTTCCTATTTTCTTTTCCCCTCATATTTTGCACCAAGCTGCAGGACTGCAAAAATTAAGCTGCTGTGCTGCGTAGGAGCCTCTTCTCCTTACACTGAGGAGAGGGAGCCCATGGTACCCTGGTAGCTCTCCAGTGATGTTACAAAGTGCAGAGTTGTCATTCTCTTCCTTTGTAGTTACAGTCTGTAAGAAGCCATGGAGTATCTTCTCTGATGGCTTCAGTTAGGAACTTAGCTCTGGGGGCACTGCTTTCCACTGCTGCTCATGATTCTGTTCTTTGCTTGTGTTCTTGGTGGCAG
Seq C2 exon
GATTTACTCAAGCACACTCCAGTGAGCCACCCTGATCATCCACTCCTGCAGGATGCCCTGCGGATCTCGCAGAACTTCCTTTCCAGCATCAATGAGGAGATCACTCCTCGTCGGCAGTCCATGACTGTAAAGAAGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695:ENSGALT00000010819:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.181
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(9.0=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(16.4=66.0),PF0016924=PH=PU(0.6=2.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATACAAGCCAGTGGATCGA
R:
CTCCCCCTTCTTTACAGTCATGG
Band lengths:
190-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]