BtaINT0027416 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017913 | BUB3
Description
Bos taurus budding uninhibited by benzimidazoles 3 homolog (yeast) (BUB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076177]
Coordinates
chr26:43276923-43277704:+
Coord C1 exon
chr26:43276923-43276970
Coord A exon
chr26:43276971-43277509
Coord C2 exon
chr26:43277510-43277704
Length
539 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCG
5' ss Score
5.65
3' ss Seq
ACCAGGCCCTTGTTCCCTAGATG
3' ss Score
7.59
Exon sequences
Seq C1 exon
GAGCGGCGGCGGGCGCGGCGGCTGAGTTGCTTCTGAACGGAGCCCGAG
Seq A exon
GTAGCGGGGCGAGGTGGCCGGGCGGAGGCACGGGCTTTCCGGGGATGCCCCCGGGGTTCCCTAGCCAGCGGAGCAGTCCGCTGGGACCGGGTTCACTTCCACGGCTTTTCCTTTTATTTAGAAGCACGCGGGGCGGCAGTCCCCGGGGCGGGGTGGGAAGAGGCTGGCGTGCAGAAGCCCACGGCGGGGGAGGGTGTGGATCCGGCGAGCCAGGCTGGAGTCAGGGGTGTGGCGGCGCGGGCCCGGCCGGTAGGGAAGCTCAGGAGGGGCGAAGGGGAGGGGTGTCGATGAGGCCCGACCGGCGAGGGCGCGGCGGCCCTGCGCAGGCGCAGAGGGCACGTCGCCGGCCTTTCCCTCGGTCCTGCCCCCCCAGAGAGACCCCCACCCCACCTACTCCGCAGCCCTTCTGCGAGTCGAGCCTCGCGACCCCGGCCCCTTGGGGGACCCGCCCCAGCCCCGTACTGCCCGGCCCTTTCTGCGAGTCGAGCCTCGCGACCCCGGTCTCTTGGGGAGACTCTCACCAGGCCCTTGTTCCCTAG
Seq C2 exon
ATGACCGGTTCTAACGAGTTCAAACTGAACCAACCCCCCGAGGACGGCATCTCCTCAGTGAAGTTCAGCCCCAACACATCGCAGTTCCTGCTGGTCTCCTCCTGGGACACGTCCGTGCGCCTCTATGATGTGCCGGCCAACTCCATGCGGCTCAAGTACCAGCACACCGGCGCCGTCCTGGACTGCGCCTTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017913:ENSBTAT00000057027:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.246
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=52.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGTTGCTTCTGAACGGA
R:
TAGAAGGCGCAGTCCAGGAC
Band lengths:
222-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]