GgaINT0042399 @ galGal3
Intron Retention
Gene
ENSGALG00000009681 | Q5ZHW3_CHICK
Description
NA
Coordinates
chr6:33089180-33092931:+
Coord C1 exon
chr6:33089180-33089284
Coord A exon
chr6:33089285-33092736
Coord C2 exon
chr6:33092737-33092931
Length
3452 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTG
5' ss Score
5.88
3' ss Seq
CATTTGTGCTCTGTTGTCAGATG
3' ss Score
7.74
Exon sequences
Seq C1 exon
GACTCTCCGGGACCGGGCTGCCTTCCTCCCCCGCGCTGCTGCGTGAAGAACGTTTCTCCTTGGTGTGGCCTCGAGAGAGGGAAGAAGCCGTGTACTATGAAAACG
Seq A exon
GTACTGCTGGGCTCGGGGCCGGGCCTCCGTGCTCTCAGTGAGGCGGCCGCTGTGTGCTGTGTGCCGGGGTCCTGGGGGCTGCAAAAGCGCTGGTTTCGTGTCTGTGTTGTACAGTGAGCTCTCGGGGGTGGTAGAATTGCAGAGGCACCCGGTGCTGAAGGTGGTGTCATGGTTCTCCCTTTGCTCGAATGTCTTCTCCACATATTATTTCCTGTGGTGCTCCAAAGTTGTGTCAGGGCTCTGCGGTGACCACAGCAGTCACTGTTTTCTGGCAGTCCAGTTATAAAAAGCTTTATTTCTGGAAATATGCAGAGCGGGTACATGTCCCTTTTTCTTCTTAATTAAGCTATGTAGAAGACACACACATACACATGCATATATATATATATGCATATATGTTTATTTCTGGGTTTAGAAATAGCTTCAGGAGTTCCTTCCAAGTCTCTGCTCTTCCTGGAGCTCTGCTTGCTGGTTGTTTTGGGGTGGTTTGTAGCTCTTGTTTCATCTGCCTCCAATAACTGCCCACTAACTTTCTGCCACAAGCAGGCATGGCTCTTAGTGTGTCTGCTTGGATCCTCATGGTTCTTGATTCCTTGCTTTGTCGTTTTTGCACACCTGTCTGAAATCCTCACTGAGGTGTGTTTCACTGTTTAAGGTGTAATGAAACTGCTGCAGAGTCCTTTATTAGTAGTGTTGTTGTGTGTGTGATGGATTTGCAAGCATATCCATCTTCTGGGCAAGGAAAAAGGGATTAAGAGTGTAATTTCTATTTCCTGTTCTTAAAAGTGATTATATTTTCTCTTCCACTTCAAGTACTCAGAGTGGTACAATTTTTGTTTTGGTGGGCATCCTTTCAAGAGCTTTCACTTAAGACTTTTTTTGCAGTGTAAGAATGTGCAGTGCTTACATCGTTCTACAGCTTGATGATGGTTCAGTTACTGACAAACACAGCACTGGAGTCGTTGTGCAGTGCAGCTGACTCTTGTCATATTCCACCTTCTTATTCTGTCTTGGTTTTTGTTCCCAAAGGTCTAATCTCTCCTCTGCATTTGTAAGTGGAAATTCAGATGTGATAACATTACAAAAAATCAGAGCTTATTGAGCCTTTTCTCAAAAAAGAAATGTGCTGTTAATGCTTAGAAAGCATTTTAAAAGATTCTGGGGGCTTTTTTGCTGTACTTATAACAGTTTCTTCATCCAGGGCATCTATAAGCTCTTCACTGTCTTTCCAGCTGAAATTTGCCTGTGGTCTCAGCTCTTGTGTACTTATTTTTTTGTGTATACCAACTAGTGCTGGTAACTATTGGAATAATCATGCAGTTGTAGTTCTTGGAAGTCCAGCACGGTCACACCGAATCAGGAATGCTTTTTGCTGGAGTTTTCCCTTCGATTCCTTTCTGTCCCCATTTTTGAAGTAAAATCTTCAGTCTCAGAGTAACTTATAAATACTTATTTCTAGAAATATAACCATATAGACAGCANNNNNNNNNNCGCCGCTTCGGGCTGCGCTCCGGTCCTCGCCTTCACTCTGTGCCTTCCTCCCGCCCAGACAGGACTCTCCGGGACCGGGCTGCCTTCCTCCCCCGCGCTGCTGCGTGAAGAACGTTTCTCCTTGGTGTGGCCTCGAGAGAGGGAAGAAGCCGTGTACTATGAAAACGGTACTGCTGGGCTCGGGGCCGGGCCTCTGTGCTCTCAGTGAGGCGGCCGCTGTGTGCTGTGTGCCGGGGTCCTGGGGGCTGCAGAAGCGCTGGTTTCGTGTCTGTGTTGTACAGTGAGCTCTCGGGGGTGGTAGAATTGCAGAGGCACCCGGTGCTGAAGGTGGTGTCATGGTTCTCCCTTTGCTCGAATGTCTTCTCCACATATTATTTCCTGTGGTGCTCCAAAGTTGTGTCAGGGCTCTGCGGTGACCACAGCAGTCACTGTTTTCTGGCAGTCCAGTTATAAAAAGCTTTATTTCTGGAAATATGCAGAGCGGGTACATGTCCCTTTTTCTTCTTAATTAAGCTATGTAGAAGACACACACACACACATGCATATATATATATATATGCATATATGTTTATTTCTGGGTTTAGAAATAGCTTCAGGAGTTCCTTCCAAGTCTCTGCTCTTCCTGGAGCTCTGCTTGCTGGTTGTTTTCGGGTGGTTTGCAGCTCTTGTCTCCAATAACTGCCCACTAAGTTTCTGCCACAAGCAGGCATGGCTCTTAGTGTGTCTGCTTGGATCCTCATGGTTCTTGATTCCTTGCTTTGTCGTCTTTGCACACCCGTCTGAAATCCTCACTGAGGTGTGTTTCACTGTTTAAGGTGTAGTGAAACTGCTGCAGAGTCCTTTATTAGTAGTGTTGTTGTGTGTGTGATGGATTTGCAAGCATATCCATCTTCTGGGCAAGGAAAAAGGGATTAAGAGTGTAATTTCTATTTCCTGTTCTTAAAAGTGATTATATTTTCTCTTCCACTTCAAGTACTCAGAGTGGTACAATTTTTGTTTTGGTGGGCATCCTTTCAAGAGCTTTCACTTAAGACTTTTTTTGCAGTGTAAGAATGTGCAGTGCTTACATCGTTCTACAGCTTGATGATGGTTCAGTTACTGACAAACACAGCACTGGAGTCGTTCTGCAGTGCAGCTGACTCTTGTCATATTCCACCTTCTTATTCTGTCTTGGTTTTTGTTCCCAAAGGTCTAATCTCTCCTCTGCATTTGTAAGTGGAAATTCAGATGTGATAACATTACAAAAAATCAGAGCTTATTGAGCCTTTTCTCAAAAAAGAAATGTGCTGTTAATGCTTAGAAAGCATTTTAAAAGATTCTGGGGGCTTTTTTGCTGTACTTATAACACTTTCTTCATCCAGGGCATCTATAAGCTCTTCACTGTCTTTCCAGCTGAAATTTGCCTGTGGTCTCAGCTCTTGTGTACTTATTTTTTTGTGTATACCAACTAGTGCTGGTAACTATTGGAATAATCATGCAGTTGTAGTTCTTGGAAGTCCAGCACGGTCACACCGAATCAGGAATGCTTTTTGCTGGAGTTTTCCCTTCAATTCCTTTCTGTCCCCATTTTTGAAGTAAAATCTTCAGTCTCAGAGTAACTTATAAATACTTATTTCTAGAAATATAACCATATAGACAGCACAAGGAAGGGGAAGCACATAACAATATTATATATCTAACCTTATAGATAAACAGAACAAAAAGTTTATGATTATTATTCCATGGTATGTTTCTGTACTTGATATTTAAAGTTCTCTATGTGGAAGAGAGTTAAGGTCTTGGACTGCGATAAGCATCTTCAGTGTTAGAGTTTGTCAGGAATCTGTGTTCCACACTCTGTGAAGGCTAGCAAGCTTTCTGGGTTTCCTTTAAATGAGCCTTAAGATGTGTCAGTTAGCCAGCTAACTCGCTGGGTTTATTTTCCTGTTGTGACTAAAATGACATTTGTGCTCTGTTGTCAG
Seq C2 exon
ATGACGGGATCAAACGAGTTCAAACTCAATCAAACTCCAGATGATGGGATTTCATCGGTCAAGTTCAGTCCAAATACCTCTCAGTTTCTGCTTGTTTCATCCTGGGACACTACAGTCCGTCTCTATGATGTTCCTGCCAACAGCATGAGACTCAAATATCAACATTCAGGAGCTGTCCTTGACTGTGCTTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009681:ENSGALT00000015757:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0040027=WD40=WD(100=55.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]