HsaINT0019247 @ hg19
Intron Retention
Gene
ENSG00000154473 | BUB3
Description
budding uninhibited by benzimidazoles 3 homolog (yeast) [Source:HGNC Symbol;Acc:1151]
Coordinates
chr10:124913760-124914628:+
Coord C1 exon
chr10:124913760-124914001
Coord A exon
chr10:124914002-124914433
Coord C2 exon
chr10:124914434-124914628
Length
432 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TCTGGGCGCCTGTTCTGCAGATG
3' ss Score
8.12
Exon sequences
Seq C1 exon
AGCGGTTTCCCTTTGAGCCGGAACAGGATGACTGGGTTGACCGATGCTGGGCAGCTGAGCGGACCAATCGGCCCCCTAGACTGAGACGTTGGCGTTTGAAATCAGCCAATGGCAGGTCTACACTGGAGCTTCCTCTCCGCCTCCTTCGCCTAGCCTGCGAGTGTTCTGAGGGAAGCAAGGAGGCGGCGGCGGCCGCAGCGAGTGGCGAGTAGTGGAAACGTTGCTTCTGAGGGGAGCCCAAG
Seq A exon
GTAGGGAGGCGAGGCGACGGTGTGCGGGAGCGGGCTCTCCAGGGACTTCCCGGGTCCGCAACTGGCAGGGCCGTTCGATTCGCAGGGGATCCCGTTTCGTTTCTGTTGTTTTCCCTTTATTTTTAGGAGTGCCCGGGGCGACGGGACCCCGGGAGAGGGGAAAGGGAACAGTCTGGGGTCCGGGCATCGCTGTGGGCCGGGCTGGGTTTAGGGGGACGGCGGTGCGGGCTGGGCCGGTTTGGGCGCGGCGGGGGCCGGATGATGGGGCGAGTCCGGACCTTGGCGGGCGAGTGCTCGGCGCAGGCGCAAGCGCAGAGTCTCCTCGCGGTCGTCCTCTCGGCCCCTCCCTCTGGGGGGACCCCCAGTGCCAGGCTGTCAGTGCGCAGCCCCAGCCCGCGGGACCCCTGGGGACTCTGGGCGCCTGTTCTGCAG
Seq C2 exon
ATGACCGGTTCTAACGAGTTCAAGCTGAACCAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCCCCAACACCTCCCAGTTCCTGCTTGTCTCCTCCTGGGACACGTCCGTGCGTCTCTACGATGTGCCGGCCAACTCCATGCGGCTCAAGTACCAGCACACCGGCGCCGTCCTGGACTGCGCCTTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154473-BUB3:NM_004725:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.246
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=52.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCTTTGAGCCGGAACA
R:
CCAGGAGGAGACAAGCAGGAA
Band lengths:
343-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)