MmuINT0026392 @ mm9
Intron Retention
Gene
ENSMUSG00000066979 | Bub3
Description
budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1343463]
Coordinates
chr7:138703905-138704418:+
Coord C1 exon
chr7:138703905-138703968
Coord A exon
chr7:138703969-138704223
Coord C2 exon
chr7:138704224-138704418
Length
255 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
3' ss Seq
CTTAGCGTTTTGTTCTACAGATG
3' ss Score
9.76
Exon sequences
Seq C1 exon
GAGTGCTCGGAGGGAAGCGGATCGGTAGTGGCCGGTGCAGAAACGTTGCTTAGGCGGACAGGAG
Seq A exon
GTAGAGGTTCGGGCGAGGGCGGGCGGAGCGGGATCTGTGGCCCGTGGCCGGCGCATCGATGCACAGAGGGATCCGGTCGAGGTCCATTGTGTTTTATATGGGGATCTGCGGGCAAGGAAGGAGGCCAGGCCGGGTGGAGCTCGGCGGAAGCGGGATGGCGGCCGGCCTGGATCAAGGGGGACTCGCGCAGGCGCAGGCCGTGGCCGGCCTCTGTTGCTCCGGTTAGGAACTCAGACTTAGCGTTTTGTTCTACAG
Seq C2 exon
ATGACCGGTTCGAACGAATTCAAGCTGAACCAGCCACCCGAGGATGGCATCTCCTCGGTTAAGTTCAGCCCCAACACATCCCAGTTCCTCCTGGTCTCCTCCTGGGATACGTCTGTGCGCCTCTACGATGTGCCCGCCAATTCCATGAGGCTCAAGTACCAGCACACTGGTGCTGTCCTGGACTGCGCCTTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066979-Bub3:NM_009774:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.246
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=53.8),PF0040027=WD40=PU(47.2=26.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGAGGGAAGCGGATCG
R:
TAGAAGGCGCAGTCCAGGAC
Band lengths:
253-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: