BtaINT0031110 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17686141-17686669:+
Coord C1 exon
chr7:17686141-17686280
Coord A exon
chr7:17686281-17686361
Coord C2 exon
chr7:17686362-17686669
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCATCTCCTCTGTGCATAGGCT
3' ss Score
9.22
Exon sequences
Seq C1 exon
GATGAAGACAAGCCCGAGGACGAGATGGCCCAGAAGCGGGCCAGCCTGCTGGAACGGCAGCAGCGGCGGGCAGAGGAGGCACGGCGGAGGAAGCAGTGGCAGGAGGCTGAGAAGGAGCAGCGGAGGGAGGAGGCCTCGAG
Seq A exon
GTGAGGCTGAGCTCAGCCCAGGACCTCTGCCCCCGGCAACCCTGCCACCTGTCTGACTGTGTCCATCTCCTCTGTGCATAG
Seq C2 exon
GCTGGTCCAGGAGGAGGTGACCCCCAGCCCCCCTGCACCCACAGCTCCTACGGCCTCTGCTGCAATCCCAGCCCCAGCTGCCCGGGCCCCTGCTGAGGAGGAGGTGGGCCCCCGGCGGGGGGAGTTCACACGGCTGGAGTATGAACGCCGGGCCCAGCTGAAGCTGATGGACGATCTTGATAAGGTGCTGCGGCCCCGGGCAGCAGGGAGTGGGGGGCCGGGCCGCGGCGGTCGGAGGGCCCCTCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCCTGGCTCGGAGCCCAGCCCGTGGACTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356:ENSBTAT00000015094:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.923
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGCTGAGAAGGAGCAG
R:
TACTCCAGCCGTGTGAACTCC
Band lengths:
181-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]