HsaINT0086969 @ hg19
Intron Retention
Gene
ENSG00000076826 | KIAA1543
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:29307]
Coordinates
chr19:7680069-7680605:+
Coord C1 exon
chr19:7680069-7680208
Coord A exon
chr19:7680209-7680303
Coord C2 exon
chr19:7680304-7680605
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CGATTCCCTGTGATCTGCAGGCT
3' ss Score
6.64
Exon sequences
Seq C1 exon
GATGAAGACAAGCCTGAGGACGAGATGGCCCAAAAGCGGGCCAGCCTGCTGGAGCGGCAGCAGCGGCGAGCAGAGGAGGCGCGGCGGCGCAAGCAGTGGCAGGAGGTGGAGAAGGAACAGCGGAGGGAGGAGGCCGCGAG
Seq A exon
GTGAGGCCGGGCCTGCCCGGGACGCCCGCTCCTTGGCCTGTCTGCCACCGCGGACCCCGTGAGCGGTTCTGATGCCGATTCCCTGTGATCTGCAG
Seq C2 exon
GCTGGCCCAAGAGGAGGCCCCGGGCCCAGCCCCGCTTGTGTCCGCAGTCCCGATGGCGACTCCAGCCCCTGCTGCCCGGGCTCCAGCCGAGGAGGAGGTGGGCCCCCGGAAGGGGGACTTCACGCGGCAGGAGTACGAGCGCCGGGCCCAGCTGAAGCTGATGGACGACCTCGATAAGGTGCTGCGGCCCCGGGCTGCGGGGTCCGGGGGTCCAGGTCGGGGCGGGCGGAGGGCCACCCGGCCTCGCTCGGGTTGCTGTGACGACTCAGCCCTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826-KIAA1543:NM_020902:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGAGATGGCCCAAAAG
R:
ATCGGGACTGCGGACACAAG
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)