HsaINT0086969 @ hg38
Intron Retention
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7615183-7615719:+
Coord C1 exon
chr19:7615183-7615322
Coord A exon
chr19:7615323-7615417
Coord C2 exon
chr19:7615418-7615719
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CGATTCCCTGTGATCTGCAGGCT
3' ss Score
6.64
Exon sequences
Seq C1 exon
GATGAAGACAAGCCTGAGGACGAGATGGCCCAAAAGCGGGCCAGCCTGCTGGAGCGGCAGCAGCGGCGAGCAGAGGAGGCGCGGCGGCGCAAGCAGTGGCAGGAGGTGGAGAAGGAACAGCGGAGGGAGGAGGCCGCGAG
Seq A exon
GTGAGGCCGGGCCTGCCCGGGACGCCCGCTCCTTGGCCTGTCTGCCACCGCGGACCCCGTGAGCGGTTCTGATGCCGATTCCCTGTGATCTGCAG
Seq C2 exon
GCTGGCCCAAGAGGAGGCCCCGGGCCCAGCCCCGCTTGTGTCCGCAGTCCCGATGGCGACTCCAGCCCCTGCTGCCCGGGCTCCAGCCGAGGAGGAGGTGGGCCCCCGGAAGGGGGACTTCACGCGGCAGGAGTACGAGCGCCGGGCCCAGCTGAAGCTGATGGACGACCTCGATAAGGTGCTGCGGCCCCGGGCTGCGGGGTCCGGGGGTCCAGGTCGGGGCGGGCGGAGGGCCACCCGGCCTCGCTCGGGTTGCTGTGACGACTCAGCCCTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826:ENST00000160298:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.941
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGAGATGGCCCAAAAG
R:
ATCGGGACTGCGGACACAAG
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development