RnoINT0028796 @ rn6
Intron Retention
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2154539-2155092:+
Coord C1 exon
chr12:2154539-2154678
Coord A exon
chr12:2154679-2154775
Coord C2 exon
chr12:2154776-2155092
Length
97 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCCTTCTGTCTAATCTGCAGGCT
3' ss Score
9.16
Exon sequences
Seq C1 exon
GACGAAGACAAGCCTGAGGATGAGATGGCTCAAAAGCGGGCTAGCCTGCTTGAGCGGCAGCAGAGGCGGGCAGAGGAGGCCCGGCGGCGGAAACAGTGGCAGGAGGCAGAGAAGGAGCAGAAACGGGAGGAGGCCGCGAG
Seq A exon
GTGAGGCTAGAGCTGGAATGAGGAGACCCTGGGCTTTGATACCGCTGTCCCAGTGCCCCTGTGTCTATTCGCTTGTTCCCTTCTGTCTAATCTGCAG
Seq C2 exon
GCTGGCTCAGGAGGAGGCTCCGGGCTTGGCCCTTTCAGCTCCCGTAGCCCCTGCTGCTCCGGTGGCCACCTTGGCTCCTGCTACCCGAGCCATGGCCCCAGCTGAGGAAGAGGTGGGCCCCCGACGTGGGGACTTCACAAGACTTGAGTATGAGCGTCGGGCACAACTGAAGCTGATGGATGACCTTGATAAGGTGCTACGGCCCCGGGCCTCAGGGACCGGGGGACCAGGGCGGGGCGGGCGCAGGGCCACCCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCTTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986:ENSRNOT00000001305:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.879
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGGAGCAGAAACGGGA
R:
GTCTTGTGAAGTCCCCACGTC
Band lengths:
176-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]