DreINT0005703 @ danRer10
Intron Retention
Gene
ENSDARG00000091359 | CAMSAP3 (2 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr1:58396817-58397306:-
Coord C1 exon
chr1:58397188-58397306
Coord A exon
chr1:58397110-58397187
Coord C2 exon
chr1:58396817-58397109
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATCTCTGTTTTCTCTTACAGTCA
3' ss Score
11.75
Exon sequences
Seq C1 exon
GAGGAGGGTCTCTCGGAGGAGGAGATGGCCCAGAAAAGGGCCCTGCTGTTGGAACGACAGCAAAGACGAGCACAAGAGCTCAAGAGACGAGCAAGACAAGGGCAGGACCCTGAGAACAG
Seq A exon
GTAAGATCATCTGCACATTCAAATCTTCTCATATTGGACTTGCTTTATGGAAACTCTCATCTCTGTTTTCTCTTACAG
Seq C2 exon
TCAACAGGCTTCCTTGGAAGACCTGCGACCGCAAACTCCACTGCTATCACAGTCTCTGCCCACCTTTTACACCCCACCTCCTCATTTGAATGCAACGCCCCCAGGCACGCCCCAGCGCTGGGGAGCATTCACACGGGCGGAGTATGAACGGCGCCATCAGCTGAAGATAATGGCTGATCTAGGGAAGGTTCTCAAACAGAAACCAACAAAGCAAAGTGGCAAAAAGCAGCATGCAAACAAACCACATAACCACGAGCTCATTCACACACGCTCACCTGGGAAGAGCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091359:ENSDART00000128742:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.970
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAGATGGCCCAGAAAA
R:
AAGGTGGGCAGAGACTGTGAT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]