MmuINT0002329 @ mm9
Intron Retention
Gene
ENSMUSG00000044433 | 2310057J16Rik
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3606267-3606820:+
Coord C1 exon
chr8:3606267-3606406
Coord A exon
chr8:3606407-3606503
Coord C2 exon
chr8:3606504-3606820
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCTTCTGTCTAATCTGCAGGCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GACGAAGACAAGCCTGAGGATGAGATGGCTCAGAAGCGAGCTAGCCTGCTGGAGCGTCAGCAGAGGCGGGTAGAGGAAGCCCGGCGGCGCAAACAGTGGCAGGAGGCAGAGAAGGAGCAGAAACGGGAGGAGGCCGCCAG
Seq A exon
GTGAGGCTAGAACTGGAATGAGGGGCCTGGCCTTTGGTATTGCTGCCCCAGTGCTCCCATATTCTATCCTGCTTGCTACCTTCTGTCTAATCTGCAG
Seq C2 exon
GCTGGCTCAGGAGGCTCCAGGCTTGGCCTTTACAACTCCTGTTGTAGCCTCTGCGGCTCCAGTGGCCACCTTGGCTCCTACTACCAGAGCCATGGCCCCAGCTGAGGAGGAGGTGGGCCCCCGGCGGGGGGACTTCACAAGACTTGAGTATGAACGCCGGGCACAACTGAAACTGATGGATGACCTTGATAAGGTGCTACGGCCCCGGGCCTCAGGGACCGGGGGACCAGGGCGGGGCGGGCGCAGGGCCACCCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCTTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-2310057J16Rik:NM_027171:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.871
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=0.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCTGAGGATGAGATGGC
R:
ACAGGAGTTGTAAAGGCCAAGC
Band lengths:
174-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: