BtaINT0038677 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57923581-57927129:+
Coord C1 exon
chr17:57923581-57923706
Coord A exon
chr17:57923707-57927033
Coord C2 exon
chr17:57927034-57927129
Length
3327 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GTCTCCTCCTTTTTGTCTAGGAG
3' ss Score
9.31
Exon sequences
Seq C1 exon
GAACGCCGCCACTCTCTGGAGAACAAGGTAAAGAGGCTAGAGACCATGGAGCGTAGAGAAAACAGACTGAAGGATGACATCCAGACAAAGTCCCAACAGATCCAGCAGATGGCTGATAAAATTCTG
Seq A exon
GTGAGCAGGAGCCAAGGTTGGCAAGTTCAACGATAACAGGTTGCAGAGGGAAGGGGGTCCAAAGAAGAAGCAGCCACCGGCACAGGGGAGGTTGTCGCCGAGCAGGCGAATTAAGAGGAAGTGGTCTTAGCGGATGACACGTCAGAGACTAGCATGAGTAACCTTACAGGTTGGACTTTTCAGCACTGGTAACAGATCCGTCAGTATGTTTTTTTTTTTTGCTCTGTTTGCTACTGCCTGACCTTTAGAAATACGAACGTGCACACGCTGTCATCTCCAATACATTTTTACAGGAGGATTTACGTACTCCTATCAGCAGAGTTTTGTATGGCTGTTAACACTGCAAATGCTCATTTAAAAAAAAGAGGGGTAGAGACTCAGGGCTTTAAGACTAACACTCAGATCCTCGCTTTTGCAGAGGAAAGAAGTTAGTCACGCAGAATTGTTTTTCTCTGAGTAGTATTTGTCATAGATCCATGCTCACCCACTCACTTTCTCTGCTACAGTTGGTTATTATTCTTATTATTATTTTCACTTTCCTTAGATGTAGCAGATCTTTTTTTTTTTAGGTTTGTAATCACAGTTATTCTGTTTTTGGCTCTGATCAAATTAACTTGATCAAGGAAGGCTTGGGTGGTACTTGCCAACGTGTTGGAAGTTTTGCTCCTGCCAGGGTGGAAAGCAGGTGAACCTTTAAAGGACTCTCCTTGAATTTCAGTCCCCAAATCAAGAATTTGAAGCCACTTTGGGGAGTGTGTTCATAGCCCCTTCCTTCCCTGCCCCTGGGAGAGACTCTGGAGTAATCGACCTTTCCTCTCCACCATAAAAAGGCAAGGTGGTAAGCAGGGTGCTTCCCGCCTCCCTCTCTCTGTCTTTCTGTCTCTGCATCACTTCTGGGAAATGAGTCACCAGCAACTATATGAACTCCAGAATGACCGAATTATAGGCCTATACTAAATACCAAACAAAACCCAATAAAAACCTGATGCTTCAAATCTTTACATCTCTGTCTATATTCATGAGCATATGGGTATTCTTGAACAAATAGATGAAAAGAGAAATCAGTTAAATTGTTTTGCTTTGACACACAGTCTTCATAGATCCGTCTATACACAAAGGCAGATGTGACTGTTAGTCTACTCTCTCTGTTCTCTCGTTCCGTCATCCAAGTTTCTCTTGGCAATTGTCAAGTGTGTGAATTTTACCGTGAGTCAAGTGAATTCCCACCGAGATTCCACCACTGCCGCCTCTTGCTTGGTGCGAACGACGTGGTTAAGTCTCTTGTGGTTGCAAAGTGTTTCTCTGTTTAATGGTGATGTGTTCATTCATTCATTCAACAAATATTTAATGAGCTTCTACTATGTGCCAGGCACTATTCTAGGAGCTGGAAACAGCAGTGAACCGCAGTGTTTGCATAACAGGACGGAAGAGTCTGATCCAACACATGTAGAAAAGATAACGTTTTAAAAAATGACAACAACAACAAAAAATGCCAAAATGCGAAGAAGTCAGATTTTAGAATGTCCGCTTTTCCAAAGGTTCATTTGCAATTAAAACGTCGGAGTGTAGAGTTCTGCATTCCTGGATTATATGTTGCAAACTCCCGTTCACTCATGGATCAGAAATTTGGTCTCAACATTGTGAATCTCAGATGTCTGAGTTTTCAACCTGTTTTCAGTTTGATTTTCATTCCTGTGCCATCTTAGGAGGACTGAAACTAAGACAATTATCAAGTGATTTCTAACGTAAAGGAAAAGTAGCAGATTTCTTTTTCCAAGTGTGTCTTATGACCTATCCTAGTACCTTTGTGGTTGTGACTTCATTTATCAGAAAGTACCTTTGTTCAAGAACCTGGTGCTTAGGCTGTTAATAAAGTATCTGGAATAGGAGCAAAGAGGGGTCCTTAATACTGTTACATAATGATGATGCTCAGAAAGTCATCTCAAATGTCATTTGCATTAAAGTATTTGCTATTCTGTTAAGAACTTTAAAAACAGATAATTGGGGTTCTCATTATAGCAGAGTCTTTTGCTTTAATAAAAAGACCTCATTTCTGGGGATCCTTTAATATACCTAAAGCCCTTAAAGTATGTTTTTATTACTTAACATCCTATTTACATTCAGTTTTTCAAAATGACATCTGTTAGATTGCAGTAGATCTTGTGCACCTGGTTTTAACATTGAATACTTTACTGGCCCCCAAGTCAAAGTCAGTGCTTGCAGACTCAGAATTTCAAAAGCTTAATCAGTACCATTTCATGTGTGTGTGAATCTGAAAGTATTTTTTCCTTCATTTTATGGTCATATCCTGTATAATTTCCTCATTCTTCAAATTCTCATAATTATTTCCATTTCAAAGAAAATCTTGAATATAGTGTGAAGAGATGAAAACTTGGAGTAATGACTTTTGATATTAGTAATTAACTAATGGGTCCAGATTCATAAGAATTAATGTAGAGGCAGATAGTTTCACTTAGAGAATATTTCAGTAAATTGAATGCTGCCTTTTATATGACCAGTTTATAATATGTTGCAAATGAATTGGTATAATTTCCAAATGAATTTTGTTTAAAAGCAGAAATCTTAATAAGAGAATGAAGAGGACTTTACATTTGAGCTGTTTATATTACTCCAAATTCTCTTCCTATCTTCCACATATGTGTACACATATTTATGTCATTTTTAGTCAATTTTATGTTCTGCCTTCTTCCCATTAGTGTTACATCATCTACACATGATCTCATATGAACGTCTCTAGATAGTCACATTCTCCATATTACCAGTCAGTTAACATAATCATTCAAAACTCAAAGTGTTTGAATTGTTATATTAGTTTTCCTTCTTAGCTAGGGTTCCTGTCCAATCATTTTATTAATGAGGAAAATATAAAATTTTTTTATCATTAAAATAAACAAAGTAAATTGCCATTACTTTTCTTGTTTAAGGCTGTCATTGGAGCAACAGTTGCCTGAGGTTCAAGATAGTGGTCAGGGGCTTTGCACTGTATGGAATTTTGAAATTGTGTTGCCTCGTTACTCTCATTTCTCTAAGCAGAGATGAAGAGCTGCCTTTGACCTGTCACACTGATAGATTTCTGATCCCAGCCCACCAGCTGTGTGTGTATGAGTGTGAGTACTTGGACTTGGAAATCCCAGGGCCAAGGCTCAGTGGCGGTTTCCTTCTCCAGAATCGTAGAGGCTAGTTGTGAGGAAACACATGCCTGTTGTCTCTGGTGCCTGTGCCAAAGCCGTGCTTCCTCTGAATGTCTGACATGCGTCGGCTCTGCCCTTCCTTCACACACCTGACCGTCTCCTCCTTTTTGTCTAG
Seq C2 exon
GAGCTGGAGGAGAAGCACAGAGAAGCCCAGGTCTCAGCGCAGCATCTGGAGGTGCACCTGAAACAGAAAGAGCAGCACTATGAAGAAAAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963:ENSBTAT00000061505:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.929 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development