GgaINT0008815 @ galGal3
Intron Retention
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9863184-9866252:+
Coord C1 exon
chr15:9863184-9863309
Coord A exon
chr15:9863310-9866156
Coord C2 exon
chr15:9866157-9866252
Length
2847 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGTATCTCTGCTGCTTGTAGGAG
3' ss Score
7.32
Exon sequences
Seq C1 exon
GAACGGCGCCATTCTCTGGAGAATCAAGTGAAGAGATTAGAGACTGTGGAACGAAGAGAAAACCGTCTAAAGGAAGATATTCAGACTAAATCTCAACAGATTCAACAGATGGCAGAAAAAATTCTG
Seq A exon
GTGAGCAGAGGTGAAAATGAAAGATAAAGGGTAAGAGTTCGTAAGAAAGGAGTAGGAAAGGAACAGAAGACATAGAATTGCATTGAATAAGGTGGAAATTGTTGAATAAAGGGATTCATTTTGTGTACTGTTCATACTGGAAAAGCTTGAATTCTCAAATTCTGTTTGCACCTTTTAGTTACAAACTATACCCTAACCCTAATGACTATACCTGTAATCTTAAGACTACTTTAAAATTCTGGTTGTCTCAGTAGGAACACACTGAACTCAGTACAGGATTCTGCAATAATAAAATCACTGACATCTAGATTTTAAACTAAATTGCAAAGGAATTTAGAGGTCAGGTCTACTTGAAATGCTTACTCCTTGAAGCAGTGAAAAATTAGTCATCTAAAGTGTTCTTCTCCAAAGGTAATATTTATTGGGAATCCATTTGTACTCACATATCTCTGTTGGCAATTTTTTGTGTATCACTTTGTTAAACATAGTAAGACTTCATATTGAGTTGGTACTTCAGTCTACAGGGAACCAAACAGAAGATATTTCAAATACTTCCCTGGGACAAGAAGCATAATCTTGAAGTAATTAAAATAATTTGCATTTCTAATGAGTGCTCTTTCTCTGTTGCCAATATGATAAGAACAAAAAGCTATTATTTTCATTAGTAGACATAGCTGAAGAAGGCCAAATGGAAATATATAAGCCTATTTGGACAAGTATGACCCATATTTGTTCTGGGTGGTAGCTGCATAGATAGACTTCAGCATCAGAATGTCTGAGAGCTCTCATGAAAAGGTGGAACCGGATCTTTGGTAGTGTTCTTTCTTTCAGATTGTTTTGATAACATGAATGCATGGTAAGTGGGAGGCTATGGCTTTGCTGGGCACAGAGCCAACTTTATATTTAGAAATGGTGTAAAACTTTGAATTGTTGTTACATAAGCCTCTTGTGTATATTTGGGGATCGTTCATTGGTTTTGATTATGTTCTCTGTGGAGGAAAATCTGGAAGGGAATGCAGAAATATCTGCTAATTGTTTTACTCCATGGGATATGTTTAGCATTTCTCATAGATAGTTTCCATGGAGTTCTGACAGAATACTGGAGAGATGCAAATTTATTTTATAAAACAAAAAACAACCATGTCAAGCAGGCATTGAAGAAATAATCCTACAGTGTCTTTCCTTTTCCTGAGTTCTTGTTTTCTTTTTCCTCCCCTTTTGCCTCCTCTTTCTTCCCTCAAGTTGATTTCTTCAAACACTTTTGACTTTTCCTGGTATAGAAAGGATAGAATGATAGTGGAGGAGCTGATGATACAGAATTGCATAGAATGAGGTAGACACTTGAACTAGTTGGATTGGGTTTGTGTAGTAGTCATCTAGTGCCTAAGAAGTCCTGCTGGATCTGTCTGCATAGAATTAAATAAGAAGTAAGAAACAAGCTAGAGAAGATACTTATTAATACTTGAAAGTGTAGATTGTTGTTATGATGCTAATAACAATTGAACGTTAGAGCTACATAGAGAATTGTAGTGAGAACTGGAATGGTAAAAGATTACCTTTGAAGTGCAAACTGGCTATTGAGTGCCTGTCATAAGCTGGTGAAGCTCCTACTCAGATGTAAGCAGTCTGAAGCTGGTAGCTTTGAAACTGTTGCTGATCTGGTCTGATTTTCTGCCAGGACCTGAAATGTGTGGGCTTCTGAGGGAGGTGAATTGTCCCTCTTGTTGCTGGGAGATATATTTCAATTGCAAAAAAGCAGCAATCTCCATTTCTTGCAGAAGTTTCGGGTACTTGGCACTGTAGATGACCTACTTTTGGTGAACCTCCTTTTTGATTTCCTCTTCTGGAAAAAGAGGTCTACTGCAATTACTGGAGCAAAGAAATCTTTGTAGTTTTCAAAATGAGGGGAAAAAAAGAATACGAGAAGGAAATTTTCCAATGCTGTGCAGTAGTGAAGGCAGGCAGGAGTCCTGCACGCATCCCAAAACCTGAACTTGTCTGTGCAGCAGCCAACCCAGCAGTAGTGAATGACAGACCTGGATCTGCCTGATGTACTAAAGAAATTGTTAGGATGGCAAATATGACAGGGAAGGAACATAAAGTTCTAAGCTCAGCTCTTGGGAGGTGTCCTATTGAAAGGTGTTTATAGATATATCCCCAGTAATAGATTCACATGGCAGACTGTTCCTCTTACTAAAATAACTAACCTCTGAGATGCAGAATTATCTCAGTCCTTGCTGTGCATAGCTGCAACTATCGGCTGTGAGGTAAAGAGGTTAAAAATACTCTGGTACCACCTACCATATATATTGCATCCTGTACTTCTCATTTTCAAAACAATTTATAAACAGTCATTCTGACAACATTTGCTTGACGAACGTGGCAAAGTAAATACTATTCCTGCTCTGTGAATACAGAATAAAAAGCATAACAGCAGTGCCCCATTATCGAGGCCTTCAGCAAGAAAGCAAAGTGAGAGACCTTGTTAAAAATAAATTGAACTTCCTGTGATGCCATGCCACTGCAGCTATAGGAGTTTTTAACTGCTTGTTTTCACAAAACATGCTTGGCCTGTCTCAGAATATGTTACTGGGAATCAGATTCTTATTGTGGAAGTAGAAATCTTTGTCTTTAGCAGTATGTTGCCTATATAGTGGATGGGTCAGCAGCAATATATAAAGCTTAAAACTGATCACGTGCAGCTCTTGTAACACTTTTTTTTTTTTCCCCTCTTTCCCTCTATGACATGGTCATACAGCATAGAGCCTTAAAAAATGACAATGAATGTTCAGTGTGTGTTAACACGTGCACAACCTGTGTCTGAATATGTATCTCTGCTGCTTGTAG
Seq C2 exon
GAGCTGGAAGAAAAGCATCGAGAGGCTCAGATCTCAGCACAGCATCTGGAGTTGCAGCTGAAACAGAAGGAACAATTCTATGAGGAAAAACTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354:ENSGALT00000011895:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]