DreINT0006308 @ danRer10
Intron Retention
Gene
ENSDARG00000088825 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr8:3786468-3790520:+
Coord C1 exon
chr8:3786468-3786593
Coord A exon
chr8:3786594-3790424
Coord C2 exon
chr8:3790425-3790520
Length
3831 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CTTCTGTCGTCTGTTCTCAGGAG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GATGGCAAAAAATCCCTGGAGAACCAGGTGAAGAGGCTGGAGATGGTGGAGCGGAGAGAATCCAAACTGAAAGACGACATTCAGACCAAATCGCAGCAGATCCAGCAGATGGCCGACAAAATCATG
Seq A exon
GTGAGACTGAGACGCGAGCGGGAGCTGAACCCCTGCTGGTTTACACATACTGCATCTAAAACACAAACAAACAGGTAAACACTGGAGTGCTGTTCACTTCAACATGACGTGTCCATCAAATGCGATTGCAGCACTGCAGAAATCCCTACCGGAGATATCACATGTACAGCTGAAGGCAGAATTATTAGCCCCTGTATTTTTTTTTCACTAATTCCTGTTGAACGGAATGAAGATTTTTTTCAACACATTCCTAAAAATATTAGTTTTAATAACTCATTTTTAAAAACTGACTTATTTTTGCCATGATGACAGCACATAATATTTGACTAGATACTGTTCAAGATACAAGTATTCAGCTTAAAGTGGCATTTATAGGCCTAAAGTGCCCCTATTATGGATTTTTGAAAACATAAGGGTCCATCTTTTAGTCCTATGATGAAACTAACAGCATGGGTGAAGGTTAGCTGCATGTAAGCCTTTTAGCACTGGGATTCCCAAACTTTTTTATTCCGGGACCCACCTAGGCAAGAAATTCAATCTCAAGACCCACCATAATATTTTAATATGGAAAAATGGGTAAAAAAAAAAGTATCCATTCAAAGCAGTCAAATGTGGCTGTATGGATTTTGCGATTTGATATGCGCAAAATGAGGCTCAAAGTGCTTTTTGTGGGATGCTGGCTGTAACTGTGATCATTTTTTTGTTGATGAAGATACTCTTCTTTTTTCATACGAGAATATGATCAATCTTTGTTGACATATTCAGAATGTTTTGTTGTCAGGTGTCGTTTAAGTTTTAAGGGTTTCATGAAAAAACTAAATCGCTTTTTGATCGACTACTACAAGCTGGAAAACGTCAGATAAATATGCCAATGCAATTAACGTTATTGCTGAATAGATCTAATATTTACACATTTGCTTGAGGAAGGAATGATGGGGGTAGTTACATTACTATTACTATTTTCCATAACATCTATGCCCTTCCATAACATTAGCTGACGTTAAAACTAACTGATAGCACTATAGCTATTTATTGATTGGCAATCTGTCAATGTTGGGGTGTAAAAAATATGGGACAACAAATATCTTCAAATAATAGAATACACAGCAAACATTAGAAAATATTGACAATAAAATAAAAAGTTTAGCCTATTAAAATCAATGGCCTATCCAGAAATTAAATAAAGCTACAAAATCTATTTCACTTTTGATTGTATTTGCATATTGATTAAAGTTACTAGAGTTATTTAGCGAAGAGCAGCAGATGAATCTCTCATTGTGTTTTGTTTGATAACAGAGGTGTTAATGCTTTAAGGCAAATTGAATAAAACTGGTTAAAAACTAGTGACCCAATTTGTTTTTCACTTAAATTAATATAAAAATGTCAACATGGGCTCATTCTGAAAACATAGCCGTATATACATTCCTGGAGATTGTGAAATATGTAGCCAGAAAAATGTATGGCTGCATTTCGTCTTTAAAATGAACTCTACGAGGTGGTATGGCGGGCGCTGTTCCTTTTCATACTTACCACCTGACCGCTTACCTCCATAAGGACAGCTTTCCCGCTGTTACCAGTTTGTCCAGTGGCTCGCCATGTACGTCAGAGTATTTGAGACCCAGAGTAAAGTTGACTATGACAACAGGGTTCGAGTCTGGCGAAGAACGGTTCCAGAAAGCAGGTAAAACAGAAGCAAAAAAAATAAAAGTAAATAACACGGTGAGAATGTGGTAAAATCTAAAAACGTGGTAAAAATCAGGCTGCCATGAGGGATTGTTCTGGATTGCTTTTCCAAACATTATCGGTTTCGTTTAGGGAAGTGGGTGGGGTTATTGATCTGTCAGTCAGTCAGTCAACATTGGTCTCTGATGGATTTATGTGAAAACAGCAGGTGTGAATGGCACTCGCGAGAGAAATTAGAGATCTGAAAAAGCGTACACAGCAGATTCTGCCGTATTTGCAAACACTGCAAAAAATAAAAATAAAAATGTAGCTCCTGTGAGGTATTTGGCACTCTCCGGAAATGTATATAGGGCTACATAATCAGAATAAGCTTAAGTTGTAAAATGTACTTTGAATGAAAGACATTAATTTCAGTTTCACTTGTTTTTAGGTGAACTGTCCCTTTAATTAAGACCAGTAACACTTATTAGTCACACCAAATATAACCACATACACACACACTTTCTTCTTTCATTGGTTGCTCTTCAACCTGCTTAGCCTGGCAGTAACAGCTTTTTCCTCATTTCCCAGCATGCTCTCTGGTCCTGTCACGGCTCCAATAGTGACAGATTGCAGGAGTGGATCATCTCCGTCTTTGGCCATGATCGTGTGTGTCACAATGATGATGGGTTTTAATGATTTCTGCTTCTTTTTGATGGATTTCTTTGATTTTAGTCATGATTAACATGTGCTGGAAATGAATCGCTTTATGTGGAAATTTGTGTTGTTATGCTTAATCAGAATTGAAACTAATATAAAAATACTTTATTTTAATAAAAATCATCATTTTTCTGAGCTGAAATAAAACAATTATTCATTCATTCATTTTCCTTTTCGGCTTAGTCCCTTTATTAATCCGGGGTCGTCACAGCAGAATGAACCGCCAACTTATCAAGCATATGTTTTACACAACAAATGCCCTTCAAGCTGCAACCCAGCACTGGGAAACATCCATACACACTCATTCACACTCATACACTAGGGACAACTTAGTTTCTTCAATTTTTTTTATAGCGCATGTGTTTGGACTGTGGGGAAACCAAAGCATCCGGAGGAAACCCACGCCAACACGGGGAGAACATGCAAACTCCACACAGAAACGCCAACTGACCCAGTCGGCACTCGAACCAGCGACCTTGCTGTGAGGCGACAGTCACCATGTTGCCACATTAAAATTGCTTTAATAAAATTCCAATACCTTACATGCCTGGATCTAACTGGAAGAAATAAAAAACAACAACTCTATGATTCTTCTTTGGAAAAACATAAAAATAATTTTATTTTAATACACACATTGTTCATTGTCAATATTCACGAGTAAACATTTTAAATTACTTTTACATTTGAGCATAATACACACAGATATTGCTTAAAATCTGGCGACTGTGTCACCAGGTCAATCACCAATAACACAGAATTCTGAATTTAGCACCCACTTGTTTGTGTCACGGTCACCAGCGATCCAGCCTGTGCAAATCGCATACAGCTACAAATTATCCGGTATTCAATTAGTTTTTCCTTGCCTTGTTTTGCTGTGTTAGACCCTTGCTTATATTGTTTATTCCTGTATGCTGACTGTCTTTTAACCTTCCGCCTGTTTATTACCATGACTCTGGATTTGCCTGTGTACATCTGTTTTCCCCTGTGTTGACCGTTGCTGACAATCCTGTTATAAACCTGCGTTCGGATCTGCACTCCATTGTCAGCGTCTCTATTGTGACAGTTTGTTGCCACACTGAATGAAAACCTAAAGCACGCTATGCTAAAATGTGTCTATTTAACCGATGCATATTACACAACGTTATGCTACAGACTTATGGGAAATGTAGTTCAGAGTGCACACATTCCCCCATCACACTCTAATAACCTCAGGTTGTTCAGAAGAGATGTCAACACAGGCTCAAACTGTGCTTAAAAGAGCTTTTCATTCAATTAAAATGTGCTAATCTCAATACAAACACGTTTAATTTTCCTTGGCAGCAAATTAACTTTCTCTTTACATCTTTTAAGTACATTTTTGAAGAAACATCATACTCTAGATGAGGCAATTCAATGATAACAAAGCTGACTCTTCTGACAGTAATGTTGTCTTCTGTCGTCTGTTCTCAG
Seq C2 exon
GAGCTTGAAGAAAATTTGCGGGACTCGCAGGCGATGGCGCAGCGCATGGAAACACAGCTGGAGCAGAAGGAAAAGCTTTTTGAAGACAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088825:ENSDART00000122454:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]