HsaINT0035525 @ hg38
Intron Retention
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119767087-119772910:-
Coord C1 exon
chr12:119772770-119772910
Coord A exon
chr12:119767183-119772769
Coord C2 exon
chr12:119767087-119767182
Length
5587 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTCTTTTCTTTTGTGTCTAGGAG
3' ss Score
9.93
Exon sequences
Seq C1 exon
GCTGTAAAAGCCAGCACGGAGGCCACCGAGCTGCTGCAGAATATCCGCCAGGCAAAGGAGCGAGCCGAGAGGGAGCTGGAGAAGCTGCAGAACCGAGAGGATTCTTCTGAAGGCATCAGAAAGAAGCTGGTGGAAGCTGAG
Seq A exon
GTGAGCAGGGAACCTCCAGCCCAGGCCCCAGCGGCCTCGGCCTTTGGCTGTGCCCAAGGAAAGAAACTGCCAGACCATCACTTGCTTATGTTTGACCAAAGCTGCTTTCCCTTCTGAAGATCCCTTTGAAACCTGAGAGGCTGGGAATCATTTCCCCCCAGGGGAAAGAAAGATTTGTCATAGCAGCTTCAAGTAGAAAGATGTCTTCATAGAAGTTTTTTCTTTCTGTTTATTTTCCTCTGACCTACCCACTAATCTGGGAGAATTTTGATTTTTATAGGTAAACCGAAGCTCCATCACTGGTTTTTTCTTTCTCTTCCCTCTGTTTTTTCCTTGCCTTTCCCCTCCACGATATTAATAGCATATTAATTTTCAAGGCTTCACCTATTACCTGCGCGTCAATGACTCTCAGATCTATATTTTTGGGCCTCTTGTCTACTTCAAATTCTTTGTTGTTGTTGTTGTTGAAATCATTTGTATAATTTTACCAGAACCACATGAGTGCCTTTTCGTAAAAAACTTAAAACAGTACAGAAGAATATAGGATAAAAAGCGATTCTTCTCCTTTACTCGTATCTGCCTCCTCTGCCCCTTGGTGTTTGTCCCACAGAAGGGGCGTGCCGTAGTTGATTTCACCCTCCTCCTATTGCTGGGTCTTTTGCTTTTTCCTGTCACATTCTTGGTGTGAACCTCCTGGTACATGTCTCTTTTGGGCCATCCTCACCCACATTCATCTGCATTTCCCCCAGCTCCCCTAAATTCCAACTGAGTGCCTGAATGGTGCATCAGATTTAGAATGAGCTCAGTCTCTTCCCTGGCAAGCTGGTTTCCCTTCTCACTTTCCTCATGCCAGGCAGGGCCACCATCATTCATCTCGTCATTCCAGGCTTGAAACTTTGGTGTCATTTCGTTTTCTCTGGACCCCGCTATTCAGTGAGTCCCTCCATCCTATAAATGCAGCCATACGTCTCCTGTTCATCTCCTGCTTCCCATTTCTGTAGCCCTCCTTGTAGTCCAAGCCCTTTCCTCTTGGCTGAGAAAATCTAATAATTTCTTGGCCATCTGCCTCCAGCTTCTCCTTCCTTCCAGCTAGTTCACACAGTGAAAGATTCATGGACCTCAAGGACCAGATTTCTCAGAATTCCCTGCCCCATCCCAAACCTTTCAGGGGTTCCATAATGCTCAGGTGCACCCCTGAGCCTGGTACCTGAAACCCTCAACCTTTGACCTTTCTGCTTTTCACCTGCCCTTCCCCTTAACATGTGCTGTGCTGTAGCCATTCCAGGCTTCTCTTGGGGCCCAGACTGGCTCTTGACTACTGCTGTGTTTCTGCTAGTGTGTCTCCTTTTGTCTGAAACATCTTCCCCCTCCTCTCCTGTCCTTCCTCCTGCAAAACACCATATACCACCCCCCTCCAGAGCTCACGCCTCTCTGATGTCTCTGCTCAACTGTCCAATTAAAAGTCCTCTTTCCTGCCTGCAACCTCCTGCAGCACTTTGTACCTCTTTGCTTTATGGTTCTTCCTCCTCTTAACCTATATTATGATTATTTGTGTTTATCTTATCTCCTCCAAGGGCAGGAATGATGCCATCTTCCTCTGTATTTTCCGTGATGCCTAGGTGGCACTTTGCAGATAGTAGGTGCTTGGTAAATATTTGAATGAATGAATGCACTCTTGTAACCTACACAACTGAGTACCTAGATTATAGAATCTTATTTTCTCTGCTGTTGCTTCGGGTGCCTGAGACTTTTCTTCCTGACTCGAGTGTATGCTTCTTGAGGGCTCTTTCCCTCGGTGCAGGTGTTATGCCCATAGCGGTTACTCCATTAAAACTCTCTGATTGATTCATGATCTACAGGAACGCCGCCATTCTCTGGAGAACAAGGTAAAGAGACTAGAGACCATGGAGCGTAGAGAAAACAGACTGAAGGATGACATCCAGACAAAATCCCAACAGATCCAGCAGATGGCTGATAAAATTCTGGTGAGCAGGAATGAAAGTCGCAAAGTTAAAAGATAACAGGTTAGAGTTTGCAAAGGGAAGGGGGTAAGAAGAAGAATTAACCGCCACAATAAGGGAGGTATCTCCAAGTAGATGAATTGAGTGAGGTGGTTTCAGCATATGCCACATCGTAGAGTAGTATGAATAACCAAATAACGGACATTTCAGCACTGGTAACAGATCCGTAAATATCGTTTTTTGCTCTGTTTGCTACAGCCTGGCTTTTTTTTTTTTTTTAGTGGAACGTGCATCTATCATTTTCAATACATTTTTAAAGGCGTGTTGACATACTTCTATCAGCAGAGCTTTGGATAGCTGTCAACTTCGCATTGCCAATTTAAAAAGCTGTAGGGGTTTAGACCTTTAAGACCGAAATTCAGATTCTTGCTTTTAGAGAAGAAAGCAATTAGTCATACAGAATTGTTTTGCTAGGAGTAGTATTTGTCATAGATCCATGTTCACCCACTCACTTTCTCTGCTACAGTTGGTTATTATTATTATTATTTTTTCAATTTCCTTAGATATAGCAGGTCTTTTTTTAGGGTCTGTAGTCATCCTGATTCTGTCTCAGGCTCTGATCACCAAATTAACTTGATCAAGGAAGGTTCGGGTGGTATTTGCAGATGTGTTGACGTTTTGCCCCTGCCAGGGTGGAAGACAGCACCTTTGAAGGGCTCTCCTTGGACCTCAGTCCCACAGCCAGAAATTTGACATCATGTTTGAGACTCAAGGATGACTTGGAGTCCATTCCTATCCCACCTGGGAGAGAGTCTCTGAAGTCATTGGTCATTCCTCTCCACCCTAAGGAGGCAAGGTCGTGAGCAGGGCACTTCATCTCTCTCTCTTCACATCACTTCTGGGAAATGAGTCACCAGCAACTATTGGAATTCCATAGTGGCCAACTTATAGGTCTATACTTAATACCAAATCAAACTGTTTACAACTTTACATTTCTGTTTGTGTGTATTTATAAATATATGGATGTTCTCGAATCAACAGGTAAAAGAAAAATGGGTTAAATTGTTTTGCTAAGACACCCAGTCTTTGTATATATGTCTGCACACAAAGACAAATGTGACTGTTAGTCTACCCTTTCTGTTCTCTTGTTCCGTCATCAAAGTTTCTCTTGGCTATTGTCAAGTGTTTGAATTTTATCATGAGTATAAAATTAGATCCCACTGAGATCCCACCGCTGCTGTCCCTTGCTTGGTATAAACGGAGTGGTTAACTCTCTTGTGGTTGCAAAGTGTTTCTCTGTTTAATGGTGATGTGTTCATTCATTCATTCAACAAATATTTAATGAGCTTCTACTATGTGCCAGGCACTGTTCTAGGAGCTGGAAATTTAGCAGCAAACAACAGTATTTGCATAACAGGACTGAAGAGTTGATCCAATATATCTAGAAAATACCTGTTTAAAAAATGACAACAACAACAAAAAATGCCAAACTACCAAGGAGTCAGATTTTTAGAATATCTGCTCTTCCTAAGGTTCACTTACAATTAAAATGGAGGAGTAGAGAGTTCTGCATTCTTGGATTATGTGTTATAAACTCCCATTCACAAATAGACCAGAAATTTGGTCTTAAAGTTGTCAGTCTCAGATACCTGAGTTTTTTGATCTAATCTTAGATTCTGATTTCCATTCCTGTGCTATCTTATGAAGACCGAAACTGGAAAAAAAAAAAAAAAGGATGATTATCAAATGATTTCTAACATAAAGGAAAAATAAGCGGATTTCTTCGTCCGAGTGTATCTTGCCACCCGCCGGAGTACCTTTGTGGTTGTGACTTCATTTATTAGAAGGTGCCTTTTGCTCAAGAACCCTGTGCTTAGGCTGCAAAGTATCTAGGAGGTGGGCAAAGAGTGGTCCTTAGTACCATTATGTAATGATGATGCCTGAACATACATCGCCAAATGTCATTGGCTTTAAAATATTTGCTATTCTGATAAGAACTTTCAAAACAGATAATGGTACAGTCAGTACAGTAGAGTCCTTGGCCTTAGTAAAAGAAGTTACTGCAAGAGATCGTTTAGCCAAGTACATATAGAACCTTTTAAAATATGTTTTTATTAATCCTGTTTATTTTCAACTCTTCAAGATCACATCTATTGAATTGCAGTAGATCTTGTGCACCTGGTCTTAAGATTGAACTTTAATTGCCCTCAGAGCAAAGCCAATGCTTGGAGACTTTAGAATATCAAAAGCTTAATCACTAACATTTTAAGTGTGTGTGAATCTCAAAGTACTTTTTCACCTCCATTTTATGAACATATCCTATATAATTTCCTCATTCTTCAAAACCCTCATAATTGCTTCCACTTCAAAGAAAAATTTCATAATAGTATAAAGAGTTGAAAACTTGGAGTAATGACTTGATATTAGTAATTAACTGATGGGTCCAGATTCATAAGAATTAATATAGATGCAGCTGTGCATTTACAGAATGTTTTAGTGAATTGAATGCTGCCTTTTGTAAGGTCAGTTTATAAAACATTGGCAAATGAACTGCAATTTTCAAGTGAATTACAGTTTTGTTTAAAAGCTAGAAACTTGGTCAGGCATGGTGGCTCGTGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGAAACCAGCCTGACCGACATGGTGAAACCTCGCCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCATGCCTATAATCCCAGCTACTTGGGAGACTGAGACATGAGAATTGCTTGAACCTGGGAGGTGAAAGTTGCAGTGAGCCAAGATCGCGCCAGTGCACTCTAGCCTGGGCAACAAGAGTGAAAATCCGTCTAAAAAAAAAAAAAAAAAGCTGGAAACTTAACAATAAAAGAATTAAGAGAACATTAAATGTAGGCTATTTATATTACTCCAGATTCTCTTCTAATCTTTAATATGTCTGTACATTTTTATGTCATTATTATCAGTGTATTATATGTTTGTCTTTGTCCCCATTTGCATTGTATCATATGAACATTATATCACATGCACATCTACAGATAGTCACATATGCCACTTACCAGTCAGTTAAAATCATCATTCAAAACTTGAAGTGCTTGGATCATAACATTAGTTTTCCTTTTTAGCTAGGGTTCTTGAGCAATAATTCTGTTAATGAGGAAAATACAAAGTATTTTTAAAAATCATAATCATATATTAAAATGACTTTTCTCATTTAAGGCTCAAGATAGTGGTCAGGGCTTTGTCATGTACTAAACTTTCCAGTGTTGCCTTGTTACTCTTATTTCTCTATGCAAAGATGAAGAGCTGCCTTTGTTCGACCTGTCATACTGACGTATTTGTGGTCTCAGGCCTTACAGCCCACCAGCTATGTGTGTATGTGTGTGCGAATACTTGGACTTGGAAAACCCAGGGCCAAGGCGTGGTGGTTTCCTTCCCAAGAGCCTTAGGCTAGTAATGGAGGACCAGATGACCGTTACCTGTGGTACCTGTACCAAAGTCATGTTTCCTGTGAATGTCTAACGTGCATTGGCGGTGTCCTGCCCTCTGCACACCTGACTGTCTTTTCTTTTGTGTCTAG
Seq C2 exon
GAGCTCGAAGAGAAACATCGGGAGGCCCAAGTCTCAGCCCAGCACCTAGAAGTGCACCTGAAACAGAAAGAGCAGCACTATGAGGAAAAGATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966:ENST00000261833:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=NA C2=0.801
Domain overlap (PFAM):
C1:
PF0026115=Tropomyosin=FE(25.7=100)
A:
NA
C2:
PF0026115=Tropomyosin=FE(17.3=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development