HsaEX0015433 @ hg38
Exon Skipping
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119767087-119772910:-
Coord C1 exon
chr12:119772770-119772910
Coord A exon
chr12:119770785-119770910
Coord C2 exon
chr12:119767087-119767182
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATTGATTCATGATCTACAGGAA
3' ss Score
5.1
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTAAAAGCCAGCACGGAGGCCACCGAGCTGCTGCAGAATATCCGCCAGGCAAAGGAGCGAGCCGAGAGGGAGCTGGAGAAGCTGCAGAACCGAGAGGATTCTTCTGAAGGCATCAGAAAGAAGCTGGTGGAAGCTGAG
Seq A exon
GAACGCCGCCATTCTCTGGAGAACAAGGTAAAGAGACTAGAGACCATGGAGCGTAGAGAAAACAGACTGAAGGATGACATCCAGACAAAATCCCAACAGATCCAGCAGATGGCTGATAAAATTCTG
Seq C2 exon
GAGCTCGAAGAGAAACATCGGGAGGCCCAAGTCTCAGCCCAGCACCTAGAAGTGCACCTGAAACAGAAAGAGCAGCACTATGAGGAAAAGATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966_MULTIEX3-14/25=13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.775 A=0.952 C2=0.801
Domain overlap (PFAM):
C1:
PF0026115=Tropomyosin=FE(25.7=100)
A:
PF0026115=Tropomyosin=FE(22.9=100)
C2:
PF0026115=Tropomyosin=FE(17.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAAAAGCCAGCACGGAGG
R:
TAATCTTTTCCTCATAGTGCTGCTCT
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development