DreEX0002552 @ danRer10
Exon Skipping
Gene
ENSDARG00000088825 | CDC42BPA
Description
CDC42 binding protein kinase alpha (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1737]
Coordinates
chr8:3762319-3790520:+
Coord C1 exon
chr8:3762319-3762438
Coord A exon
chr8:3786468-3786593
Coord C2 exon
chr8:3790425-3790520
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTGGGATTGATCAGGAT
3' ss Score
4.54
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
AGTTTGAAGCGCAGTTTGGAGCAGGCCCGCATGGAGGTTTCGCAGGAAGATGATAAAGCTCTTCAGCTGCTGCACGACATTCGAGAGCAGAGCAACAAACTGCAGGAAATCAAAGAACAG
Seq A exon
GATGGCAAAAAATCCCTGGAGAACCAGGTGAAGAGGCTGGAGATGGTGGAGCGGAGAGAATCCAAACTGAAAGACGACATTCAGACCAAATCGCAGCAGATCCAGCAGATGGCCGACAAAATCATG
Seq C2 exon
GAGCTTGAAGAAAATTTGCGGGACTCGCAGGCGATGGCGCAGCGCATGGAAACACAGCTGGAGCAGAAGGAAAAGCTTTTTGAAGACAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088825_MULTIEX1-5/6=C1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=1.000 C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGAAGCGCAGTTTGGAGC
R:
TCTTGTCTTCAAAAAGCTTTTCCT
Band lengths:
210-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]