MmuEX0011455 @ mm9
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:116386738-116391941:+
Coord C1 exon
chr5:116386738-116386878
Coord A exon
chr5:116388688-116388813
Coord C2 exon
chr5:116391846-116391941
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATTGATTCACGACCCACAGGAA
3' ss Score
4.27
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTAAAAGCCAGCACAGAGGCCACCGAGCTCCTGCAGAATATCCGCCAGGCAAAGGAGCGAGCAGAGCGGGAGCTAGAGAAGCTACACAACCGGGAAGACTCCTCCGAGGGCATCAAAAAGAAGCTGGTGGAAGCCGAG
Seq A exon
GAACGCCGCCACTCCCTGGAGAACAAGGTAAAGAGACTAGAGACCATGGAGCGTAGAGAGAACAGACTGAAGGATGACATCCAGACAAAGTCCGAACAGATCCAGCAGATGGCTGATAAAATTCTG
Seq C2 exon
GAGCTGGAGGAGAAACATCGGGAGGCTCAGGTCTCAGCTCAACATCTAGAAGTACACTTGAAACAGAAAGAACAGCACTACGAGGAAAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=1.000 C2=0.782
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAAAGCCAGCACAGAGGC
R:
TTGATCTTTTCCTCGTAGTGCTGT
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: