MmuEX0011455 @ mm10
Exon Skipping
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:115936729-115941932:+
Coord C1 exon
chr5:115936729-115936869
Coord A exon
chr5:115938679-115938804
Coord C2 exon
chr5:115941837-115941932
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATTGATTCACGACCCACAGGAA
3' ss Score
4.27
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTAAAAGCCAGCACAGAGGCCACCGAGCTCCTGCAGAATATCCGCCAGGCAAAGGAGCGAGCAGAGCGGGAGCTAGAGAAGCTACACAACCGGGAAGACTCCTCCGAGGGCATCAAAAAGAAGCTGGTGGAAGCCGAG
Seq A exon
GAACGCCGCCACTCCCTGGAGAACAAGGTAAAGAGACTAGAGACCATGGAGCGTAGAGAGAACAGACTGAAGGATGACATCCAGACAAAGTCCGAACAGATCCAGCAGATGGCTGATAAAATTCTG
Seq C2 exon
GAGCTGGAGGAGAAACATCGGGAGGCTCAGGTCTCAGCTCAACATCTAGAAGTACACTTGAAACAGAAAGAACAGCACTACGAGGAAAAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=1.000 C2=0.803
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAAAGCCAGCACAGAGGC
R:
TTGATCTTTTCCTCGTAGTGCTGT
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types