RnoEX0021387 @ rn6
Exon Skipping
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46399344-46404455:-
Coord C1 exon
chr12:46404315-46404455
Coord A exon
chr12:46402462-46402587
Coord C2 exon
chr12:46399344-46399439
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATTGATTCACGACCCACAGGAA
3' ss Score
4.27
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTAAAAGCCAGCACCGAGGCCACAGAGCTCCTGCAGAACATCCGGCAGGCAAAGGAGCGAGCTGAGAGGGAGCTGGAGAAGCTGCACAACAGGGAAGATTCTTCCGAAGGCATCAAAAAGAAACTGGTGGAAGCTGAG
Seq A exon
GAACGCCGCCACTCCCTGGAGAACAAGGTAAAGAGACTAGAGACCATGGAGCGTAGAGAGAACAGACTGAAGGATGACATCCAGACAAAGTCCGAACAGATCCAGCAGATGGCTGATAAAATTCTG
Seq C2 exon
GAGCTGGAGGAGAAGCATCGGGAGGCTCAGGTCTCAGCTCAACACCTAGAAGTACACCTGAAGCAGAAGGAACAGCACTATGAGGAAAAGATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=1.000 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTAAAAGCCAGCACCGAGG
R:
TGATCTTTTCCTCATAGTGCTGTTCC
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]