BtaEX0009080 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57921571-57927129:+
Coord C1 exon
chr17:57921571-57921711
Coord A exon
chr17:57923581-57923706
Coord C2 exon
chr17:57927034-57927129
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATTGATTCACGATCTGCAGGAA
3' ss Score
4.44
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTGAAAGCTAGCACAGAGGCCACCGAGCTGCTGCAGAACATCCGTCAGGCGAAGGAGCGGGCCGAGCGTGAGCTGGAGAAGCTGCACAACCGTGAGGACTCCTCCGAGGGCATCAAGAAGAAGCTGGTGGAGGCCGAG
Seq A exon
GAACGCCGCCACTCTCTGGAGAACAAGGTAAAGAGGCTAGAGACCATGGAGCGTAGAGAAAACAGACTGAAGGATGACATCCAGACAAAGTCCCAACAGATCCAGCAGATGGCTGATAAAATTCTG
Seq C2 exon
GAGCTGGAGGAGAAGCACAGAGAAGCCCAGGTCTCAGCGCAGCATCTGGAGGTGCACCTGAAACAGAAAGAGCAGCACTATGAAGAAAAAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=0.929 C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAAGCTAGCACAGAGGC
R:
TTCTTCATAGTGCTGCTCTTTCTGT
Band lengths:
226-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development