GgaEX1015551 @ galGal3
Exon Skipping
Gene
ENSGALG00000007354 | CIT
Description
NA
Coordinates
chr15:9862649-9866252:+
Coord C1 exon
chr15:9862649-9862789
Coord A exon
chr15:9863184-9863309
Coord C2 exon
chr15:9866157-9866252
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTTACTAATTGCTCTGCAGGAA
3' ss Score
8
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GCTGTGAAGGCTAGCTCAGAGGCAACCGAACTGCTTCAGAATATCCGTCAAGCTAAGGAGAGAGCTGAGAAGGAGTTAGAGAAACTTCAAAATCGGGAAGATTCTAATGAAAGCATGAAGAAGAAATTGCTTGAAGCAGAG
Seq A exon
GAACGGCGCCATTCTCTGGAGAATCAAGTGAAGAGATTAGAGACTGTGGAACGAAGAGAAAACCGTCTAAAGGAAGATATTCAGACTAAATCTCAACAGATTCAACAGATGGCAGAAAAAATTCTG
Seq C2 exon
GAGCTGGAAGAAAAGCATCGAGAGGCTCAGATCTCAGCACAGCATCTGGAGTTGCAGCTGAAACAGAAGGAACAATTCTATGAGGAAAAACTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007354-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=0.833 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGAAGGCTAGCTCAGAG
R:
TGAGTTTTTCCTCATAGAATTGTTCC
Band lengths:
235-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]