RnoINT0036638 @ rn6
Intron Retention
Gene
ENSRNOG00000001143 | Cit
Description
citron rho-interacting serine/threonine kinase [Source:RGD Symbol;Acc:70878]
Coordinates
chr12:46399344-46402587:-
Coord C1 exon
chr12:46402462-46402587
Coord A exon
chr12:46399440-46402461
Coord C2 exon
chr12:46399344-46399439
Length
3022 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GACTGCTCTTTTGTATTCAGGAG
3' ss Score
8.1
Exon sequences
Seq C1 exon
GAACGCCGCCACTCCCTGGAGAACAAGGTAAAGAGACTAGAGACCATGGAGCGTAGAGAGAACAGACTGAAGGATGACATCCAGACAAAGTCCGAACAGATCCAGCAGATGGCTGATAAAATTCTG
Seq A exon
GTGAGCAGGAACCAAGGATGCAAAGTGCAAAGCTAAGAGGTTACAGGTCTCACAGGGAAGGGGGCAAGAAGGCTCGCACGCCATCCCGTGGGGGTGTCACCGAGTAGGTGGATGGAGAGCAGTGGTGTCAGAGACACCTGTGGAGTGGTGTGGATGAGCCAGGCCTGTACAGCTTAGCACCAGTGACAGAACCACTGCAGTTTCTCAGTCTGCTCTTGCCCGGCATCTTAAAAAACAGAACCGGGCCTTTGTCACGCCCTCCTCTCAGCAGAGTTTTGCTTGGCTGGTAACTTGGCAAAACCAGTGCAGAAAGCTTTTGGGACTTTAGACATCTACAGCCCAAACCCTGATTCTCACTCTCAAAAACGAAAGAAGTGAGCCACACGGGCTGTTTTCCTCAGGGCAGTATCTGTCTCAGGCGCTGTGCTGCTGCTGACGGAGGCTGTGCCCTTACCTCATGGTCTCAGCTGGAGCTTCTCTTCTCAGGGCTGCTGTCATTCAGTCTGTCTTTGGCACTGATGACCAAATTAACTGAATGAAGGGAATGTTGGCAGAAGCGTTAGCTTATGTCCCCAACACAGGGTAAAGGACTGCCTTCGAGCTTTGCTCCCAAAGTCAGAAGTTTGATGTCATGTTTGAGAGGCTCAGGGGTGGTTTGTAAGTCAAGCACAATTCCCCTGTTGTCCCCACAGAAGGAGATGGGGGTGTCACTTCTGGGAAGTGGGATACCCATGGGCGTATGGCCTCAGGGACGGCTGACTTACAGGTTTGCACAGTATTTACACCTCATAGATGACTCTGTGTCTCTTCACAAATGTTAAGGTTGTTCTTGAGCAAATTCCTAAGAGAGGAATTAGTTAAATTGTTTCCCTTTGCCATCCAGTCTTTATATTTATGTGCGTATGTGTGTGTGTCCGCACACAAAGGCAAATGTGGTTGTCTCTTCTCTTCCGATCTCTTGTTCTGTCTTCAAAAATCTTTTCCGCTGTTGTTAAGCATGTGAGTTTTACTGTGAGAAAGACAAATGCTGACACTGTTACCCTTTACCTGGTTAACAAGCGACTAACAAAAGGTTTAACTCTTTCGTGGTTCCAGAGTGTTTCTTTACTTAATGGTGATGTGTTCATTCATTCATTCAACAAATATTTAATGAGCTTCTACTATGCGCCAGGTCCTGTTCCAGGAGCTGGAAATGTAGCAGTGAGCAGGAAGAGCTGCTCTAATACTTATAGAAAAAAGATACATTAAAAAATAATAACAACAACAACAAAGACAAAAACCACCCAGTAGTGAGGTGTGAGTGACCCGACCCTGCATTGTAGAAACCGTCCCTGTGGTTGTCAGGCCCAGCTGTCTGAGTGGTGGGCTTTCCCTTGAACCAGTTTGTAGGTTTCTATCCCCTTTTCTGTGCCACTGTGTGAGGACTGAACCCATGAAAGGATGATTAGCAGGTGACTTGTAACCAACCAGAAAAGCAAAATTTCTTTATCCGAATATACCTCGTCAGCCTGCCCAAGTGCCTCTGTGCATGGCTGTCTGTGCCCTTGTTTTAACAGAATGTGCCTCTCGCTCAAGGGCCTTGTTCTCAGGCTGCAGAGCATAGGGGACGTGGGCCAAGAATGGTCCTTCACACTGTCCCAGGACAGAGACACTGCGACAGGTCCCAAATGTGCTTGCTCTTCCAATAAGGAATTTCAAAATGTGTTAGCGGGGCCCTCAATCAATCAAAGGAGTCTTTGCCTCAGGTCCTTTAGTGAACATGCTCAAAGCCCGTAAAATGTTTTTATTAATTAGACTCCTGTTTATGTCCAATTTCCGGAGAGCACATCTGGTGGACTGCACTGGGCTTTGTGCACCTGCTCCTAAGACCAAACATTTAAACGCCGAGCTTGAGCCTGCAGGACTGTGGTTTCCGAAGCTTCAGGCTGTAACATTTTTTTGTGAGCACGTGACTCTCATAAGCTCCCCCACCCCCTGTTTTGTGGACATATCCCACATAATTTCCTCATTTAGAATTCTCCATCACTGTTTCCACTTCACAGGAAAAGTTCAAATAGTGTGAAAGAAGAGAACTTGGGGATACTGACCTCCTGTGACCTCTGGTGTGAGAAATTACAGTGGGCCCAGATTCTGTGTCTGTGGTTTGGGTGCCTACATCTCGTTGGATGCCGCCTTTCGTAAAGGGCCAGTTTCTACCACACGGACGAATGAATTGCTGTACTTTTCAAATGAATCCCACTTTTGTTTAAAGACAAAAATAGCAAGAGAGCCTTCAGCTCTAGCTGTTCACGTAACCCCAGCTTCTCTCCTCCTCACGCGTGTAGGAAGGCGTTTCCGAGGTCACTGCCCATGTTCCCGTTCGCATTGTTTCGCATAAAAATTGAATCACGTGCTCATGTCCAGTGTTCACATGCCCACATTCCAGCCATTTACGCTAACCTTTCATACTTGCTAATCGTAGTCGCTTTCCCCTTTGGTGAGGGTTCTTGAGCAATGCTTAATGAACGGGGAAGACCCCCAGTACTGCTTATCTCCATAATAAACCAAAACCCCTTTTCTTATTCAAGGCTGATGAACCTCAGCACCGTAAATAGCCGGAGGCTTAGGACAGTGGTCAGGGTCTTTGTGCCGTTTGTTACCTTTATTTCTGTGTGAAGTCAAGCTGCTGCCTCTGTCCTGACCTGTCACACCAATGCATCTCCAGTCCCAGCCTCACAGCCTACCGGCTGAGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGTGTGTCTGTGTCTGTCTGCACGCACTCTTGGAGTTGGGAGAGCCAGGACCACACGGTGGCGCTGCTTTCCTTCCCAAGAGCCTTAGTCTAGTGTTGCAGGAACAGCGGCTTCCTGTCACCTGCAGTGTCTATGGAGTCGCATTCCCCTGTGAGTGTCTCATGCTTGGGTTGGCACCCTTCCCCGACCCATCATGCCTGACTGACTGCTCTTTTGTATTCAG
Seq C2 exon
GAGCTGGAGGAGAAGCATCGGGAGGCTCAGGTCTCAGCTCAACACCTAGAAGTACACCTGAAGCAGAAGGAACAGCACTATGAGGAAAAGATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001143:ENSRNOT00000041281:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]