BtaINT0043816 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3087430-3088490:-
Coord C1 exon
chr25:3088344-3088490
Coord A exon
chr25:3087548-3088343
Coord C2 exon
chr25:3087430-3087547
Length
796 bp
Sequences
Splice sites
5' ss Seq
ACTGTACGT
5' ss Score
6.33
3' ss Seq
AGTACGTGCTGTCCTTTCAGTGT
3' ss Score
7.94
Exon sequences
Seq C1 exon
CCCCCTGATGAATGACGGCTCAAACTCTGGAAACATTGGCACCCTCAGCACTATACCTGCAGCAGCACCTCCTTCCAGCACCGGAGTTCGGAAAAGCTGGCACGAACACGTCACTCAGGACCTGCGGAGCCATCTAGTGCATAAACT
Seq A exon
GTACGTGGCCCCCTCGCCTGTTACTCACATGTGGTGGGAGCACTTTGTGACTGATGGCAGTGTGACAGTTTTGCAGTTTGCTGGGTGTCTGATTTAACGCCCAGGTGTTTTTTTGGGCCCTAGGTGATCATACCCTTGCAACTGAAGGGGGTCACGTGCTTGTTTAGGGAGGCCAGAGGATCCCAGATTCTGAGTGCCCAGTGGATCCTGGAGAGGAATATGAACTTTGACCCATGTCACAGGGGCAGGCCTGTTCTCTAAGCTCTCAGTGCACGGGGAGCTGGGACTCACTCAGAAGCTTGTCTTATTTTATGGCTCAAGGTTATAGTTGTGGGGAGCCCTGAGAATTGCAGGCATTTGGGCCTAGTAAATACAGATGGCTTCACAATACCATCATACAATTAACATGGGAAATTCATAGTTGATTTCTCCAGCAATTTAAGTTAAATGAAGGTGACGTTAATCAACTCAATTCCGATGGAGTTTTCTTTTTTTTCTCCTTCATTATTTTAATCAAAAATTTTTGTACTTAGTAGTTTAAAGATTAGGAATTCAAAATCATAGTATTCTTGAATTGGTCAAGCATTTATTGTTAATAGCAAAATGTTGTGTTTGACTTGTGGATAAATTGACAGATCAGTATTGTCTCCAAAGAGTGACTGCATATGGGGGTCTCTCAGCAGTGTATTGTACCCAAAGGTAGACAGCGGTTTGTTCTCTTCCCGTGTCACATGTGAAATGGCAAGATGTTGATGTTGTATTAAAAGTAGATTGAGAGTACGTGCTGTCCTTTCAG
Seq C2 exon
TGTCCAAGCCATCTTCCCGACACCTGACCCTGCAGCCCTGAAGGATCGCCGCATGGAGAACCTGGTGGCCTACGCTAAGAAAGTGGAAGGGGACATGTACGAGTCTGCCAACAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403:ENSBTAT00000005092:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0217211=KIX=PU(25.9=42.0)
A:
NA
C2:
PF0217211=KIX=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTGATGAATGACGGCTC
R:
GCTGTTGGCAGACTCGTACAT
Band lengths:
262-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]