RnoINT0041947 @ rn6
Intron Retention
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11680804-11681758:+
Coord C1 exon
chr10:11680804-11680950
Coord A exon
chr10:11680951-11681640
Coord C2 exon
chr10:11681641-11681758
Length
690 bp
Sequences
Splice sites
5' ss Seq
ACTGTATGT
5' ss Score
5.19
3' ss Seq
AGAATACATTGTCCTTTCAGCGT
3' ss Score
6.64
Exon sequences
Seq C1 exon
TCCGCTGATGAATGATGGCTCCAACTCTGGTAGCATTGGAAGCCTCAGCACGATACCCACAGCAGCACCTCCTTCCAGCACTGGTGTTCGAAAAGGCTGGCATGAACATGTGACTCAGGACCTGCGGAGCCATCTAGTGCATAAACT
Seq A exon
GTATGTAACCCTCATGAAGCACATTCACATTTTGTGGCTGAGGGCATTGTTGAATCTCTGTGGGTCTGTAGATGTTTGATTTTGTTTTTTATCTGCATGTTGAACCTCAGTTTATAGCTCAGAGCTATACAGGGTCCATGCTTGCTTCAGAAAGCCATCCCCACTGCTAAGAGATGTAGGAATGCTGACCTTCTTAGACTCTGGTCCCCATTGTGTAGTGGATCAGAGAGCATAGAGACGTGACCTGTAGCCCAACCTTTTTGCTTTCAAGCTCAACCATGTTTAATGACTTGAAACTTGTTATAGAGCTCCCTAAAACTGGGGAAATTTTGATCTGGTAAGTACAGATGTTATAACAGTTTTTTTATGTACAGAAAGTTAATGTCTCCATGCTATCTGTCCTGAGTTGAAATGAAGTTAATCAACTATAGATTCTTCTTACTTTGTTTTTATAATGCATAGTTTCAAAATAGCAATTTGGAATTATACTATTTTTTTTTAATGGCTTAGCACATACATGTGTTTGGTATGTAGATATTGGGTATGTAGATGCAAGGTTAGTATTGTTTCCCATGTTCATGAACAGTAAGATTTGGGCCCCCTACAGGTAGCTGGCCATTCCTGGTTTTATTGTTTAGTTCTCTTGTGACCAGCTTGAGAGCAGGTTGATAGAATACATTGTCCTTTCAG
Seq C2 exon
CGTTCAAGCCATCTTCCCGACTCCTGACCCGGCAGCTCTGAAGGATCGCCGCATGGAGAACCTGGTTGCCTATGCTAAGAAAGTGGAGGGAGACATGTATGAGTCTGCTAATAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330:ENSRNOT00000007079:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.400
Domain overlap (PFAM):
C1:
PF0217211=KIX=PU(25.9=42.0)
A:
NA
C2:
PF0217211=KIX=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCTGATGAATGATGGCTC
R:
GCTATTAGCAGACTCATACATGTCT
Band lengths:
262-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]